Ccap002517.1
Basic Information
- Insect
- Ceratitis capitata
- Gene Symbol
- bab2
- Assembly
- GCA_000347755.4
- Location
- NW:3720553-3725040[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.9e-15 5.1e-12 44.8 0.0 2 44 337 379 336 380 0.94 2 3 0.0021 3.6 6.8 0.0 23 37 405 419 395 425 0.83 3 3 4.4e-18 7.7e-15 53.8 0.0 3 41 447 485 445 487 0.92
Sequence Information
- Coding Sequence
- ATGAATCATTTGAAATGGATGGGCCATTCGGCAACTATTTTTGATATCCAAAGAAATCTTCGCAATGATCCACAAAGCTGTGAAGTGACGCTGGTAGCCAAAGGTCACTCGGTGCGGGCTCACAGGTTTGTACTATCATCTTGTTCGGATTTGCTGCGAAATCTGCTGGTAGATGTGCCAATGGGACAGGAAGCTACAATTGTTGTGCCGGACATAAAAGGTTCTCTGCTAGAAAGTGTATTGGCATTTATATACATTGGTGAAACAAGTCTTACATCAACTAATTTGTCCGAGTTTTTGGAGGCAATTAATACCTTGGGTATTAAATCGGCAATTAGTTTTGAATGCAATAATGCTACATTATCGGGAGCTGTACAAACAACTGTTCCAATTAAAACATTAAGTAATATACAAATTGCGCAAGAAGAATTAATTGAGCAACAAGAAAATATTGCCGTAGAGAAAATCGagaCACAACACGTAATACAACATGATAGAGAATTAGAATTCTTGGATGTATACAATGAGGCTCAACACAGTAAGATCACCTACTCAATAGAGCATATGCCGGTCGCCAACACTGCAAATGAGTATATTTTGACTGAAAATTCTGGGACATTCACTTTGACgcaaaataaacttgaaaatgCTTCTAATTCGGATACAGAAAAGTTGGTTGAAATGGAAGATACCACTGAAGATGGTCACATCATAGAAGAGTATAGCAGTAACAGTGCTGATCCTATAATTGAAATATCAGCGACTACTTCAACGACAAGCACTCCAAAAGCAACTGCCACCACAACCACAACTTCTCAAGTGCCACAACcgattatacaaattaaaccaacaccaaaaataaaagcaataaaaatcaaaacccAATCTCCTGCTGAAACAGAAGAAATAAACCAACCAATGTTTACAACACTTGACCCAACGACGGACCCGATTTCAGTATTAAAGACTGAGGACACATTTGCTTCTTTGAATGCACCTGGAACACCAGAGGATTCACTATATTATGCCGTACAGGCGGTAATAAACGAAGGCATGAGTTTACAGAAGGCCGCCTTAAAGTATGACCTTTCAAAAACCGTTCTTTGGAGAAGAGTACGCAAGCATccaaattatatgaaaaccaCAAGAGAGAATCCTGTTCTAACAATGGCCTATGAACGTTTAAAGGGTGGTGACTCCTTAAAGAATATTAGTCGCGAATTGGATATACCTATGTCAACTTTGCATAGACACAAAGTACGATTAGCGCAGCAAGGTCGGTTGCCGGATTATGTTTCCTTTAAAAAACGTGATGTCAATTCGAAAATAGAATTAAAGGATAAATTAACTAAAGCGCTACATGCTTGCGTTCACGAAGGAATGTCACAGAATCATGCTgccaatttatttgatataccGAAGAGTACTTTGTGGCGTCATTTGCAAAAACGTGTAGCAGAGGCAGAACTGTCACAGAAACTTGAGCAAGGTCAGATTAAGGAGGAAGTAATTTTATCATAA
- Protein Sequence
- MNHLKWMGHSATIFDIQRNLRNDPQSCEVTLVAKGHSVRAHRFVLSSCSDLLRNLLVDVPMGQEATIVVPDIKGSLLESVLAFIYIGETSLTSTNLSEFLEAINTLGIKSAISFECNNATLSGAVQTTVPIKTLSNIQIAQEELIEQQENIAVEKIETQHVIQHDRELEFLDVYNEAQHSKITYSIEHMPVANTANEYILTENSGTFTLTQNKLENASNSDTEKLVEMEDTTEDGHIIEEYSSNSADPIIEISATTSTTSTPKATATTTTTSQVPQPIIQIKPTPKIKAIKIKTQSPAETEEINQPMFTTLDPTTDPISVLKTEDTFASLNAPGTPEDSLYYAVQAVINEGMSLQKAALKYDLSKTVLWRRVRKHPNYMKTTRENPVLTMAYERLKGGDSLKNISRELDIPMSTLHRHKVRLAQQGRLPDYVSFKKRDVNSKIELKDKLTKALHACVHEGMSQNHAANLFDIPKSTLWRHLQKRVAEAELSQKLEQGQIKEEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01357850;
- 90% Identity
- iTF_00303916; iTF_00192929; iTF_00192739; iTF_01563908; iTF_00189863; iTF_00192199; iTF_00192008; iTF_00191474; iTF_00191284; iTF_00190070; iTF_00190780; iTF_01562812; iTF_01563037; iTF_01563678; iTF_00190592; iTF_01045388; iTF_01045602; iTF_00082049; iTF_00082249; iTF_00083085; iTF_00091091; iTF_00091444; iTF_00081367; iTF_00082842; iTF_01189306; iTF_01189626; iTF_00081117;
- 80% Identity
- iTF_00303916;