Cpin004987.1
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963556745.1
- Location
- OY750762.1:13921275-13931178[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.21 5.4e+03 -3.1 0.1 239 280 54 95 36 96 0.52 2 3 1.8e-73 4.6e-69 233.5 23.1 1 264 114 396 114 420 0.84 3 3 1 2.6e+04 -7.2 13.9 1 156 417 469 415 490 0.53
Sequence Information
- Coding Sequence
- ATGGGCAGGCGGTCCAAAATGGCTACGCCTAATAATAGTGATGAGGAAAGTGGTGGTGCATTCACTGACGGTGACTTCGATGATACAGACGAAGAGACAGTCGTCGAAAAAATAGGAGACAAATCACAAATTCCTGTAAACGAAACTGTAAATACAGATGTACATAAAGAAAACGGACATTTGTCTCGCCAACATTCTAATTGTTATGAACAAGCTAAAGTTAATGGACATAAAAATTACGAAAGTGGCCAAGGAGAAGCTACCGTTGACTTACGAAGAGATTCCCATGGCGACCAGAACCCGTCAATAGTTGGGATCCTTGGTGATCAACAAAACCATGCAGAACAGCGACTTGCagcgcggcgggcagcgcgcgcGGAAGCGCGGGAGATCCGCATGCGGGAACTGGAGCGGCAACAACGCGAGCAGGAGGACCATGCCGATAAGGCGTATGACATGTACGGCAACGCCACCTCCCTGCGCGCCACCGCCGCCGACTTCAAGGAATCGGTGGGCCGGCGCGGCGGATCACGGCTTGCGAGTCTGGGCTCGGGGGCGCTACATTCGCCGCGGCGAAGCTCCGAGGATTCCGCCGACGACGCCTTCAGTATTAAGGATCTCAGGCATGAGCTGAAAGAGGTGGAGGAGAAGTTTCGCAAAGCGATGATCCTGAACGCCCAGATGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTGCACGAAGAGTACGCGCAGCTACAGCGCGAGCACAAAGAGAAGTGTTCAGCTCACGAGCGGTTGAAGCGCGAGCACGCGTCGTTGGAGCGCGAGGTGTGCGCGGCGCGCGACGCCGTGCGGGCGCGGGACGCCGCCGCGGCGCACGCGGGGTTCGCGTTCGTCGACGCCGCGGTCaacgccgacgccgacgcacACGCAGACGCAGACGCCCACGGCGCAACCACAGCGCCTGGCTTCGGATCGGTGCCGCCACTGGCGCTAGTGTCGCATCAATCCGAGCAGATGCTCAACGAGGCCGGCGAGGGAACGCTGGACGTGCGGTTGCAGAAGCTAGTGGCGTCCAGGCAGGCGCTGGAGTCGGAGGTGCGGCGCCTGAAGCTGGCGCTGCACGACGAGCGCGCCGCCGCGCACAACGGCCTGCACGACCACGAATTGGAGAACGAACTGGAAACTTTACGACGCTGCGTGTCGGAAGCTAAAgcgcgcgcggcgcgggcggaGGCCGAGGCGGCGCTGCAGGGCGCGGCCGTCGCGCGCCTCGAGGCGCAGGTGGCCCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGACCAGCTCAAGCACGAGCGCCGCCGCCTGCAGCGCGAGGCGCGAGAAGCTCTGAACCGCGTGGAGGAGCTAGAGACGGAGAACAGCCACCTCACCAAGCGACTAGACAAACTCAAGAACGCCAAGTCAGCACTACTCAAGGAGCTGTGA
- Protein Sequence
- MGRRSKMATPNNSDEESGGAFTDGDFDDTDEETVVEKIGDKSQIPVNETVNTDVHKENGHLSRQHSNCYEQAKVNGHKNYESGQGEATVDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYGNATSLRATAADFKESVGRRGGSRLASLGSGALHSPRRSSEDSADDAFSIKDLRHELKEVEEKFRKAMILNAQMDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHASLEREVCAARDAVRARDAAAAHAGFAFVDAAVNADADAHADADAHGATTAPGFGSVPPLALVSHQSEQMLNEAGEGTLDVRLQKLVASRQALESEVRRLKLALHDERAAAHNGLHDHELENELETLRRCVSEAKARAARAEAEAALQGAAVARLEAQVARLRARQDHQDEHEDQLKHERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00681668; iTF_00683380; iTF_00448147;
- 90% Identity
- -
- 80% Identity
- -