Dsac028466.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_014843785.1
- Location
- JACGTY010006296.1:4545-18117[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.13 4e+03 -2.5 0.6 56 74 52 70 26 105 0.50 2 3 8.1e-74 2.4e-69 234.6 29.2 1 297 126 444 126 447 0.87 3 3 0.15 4.5e+03 -2.7 6.3 1 35 443 477 443 489 0.86
Sequence Information
- Coding Sequence
- ATGATCTTAATCAAGTTATCCGAGATGGCCACACCCGATAATAGTGATGAAGAGAATGATGGAGCGTTCACTGACGGTGATTTCGATGAGAGCGACGAAGAAACCGTCATAGAACAAGTCGGCGAGAAGTCACAAATACCTGTTAATGAAACGGTGAATTCAGATGTGCAAAAAGAAAATGTGAAATTGTCTAGGCAAAGTTCAAACGGGTACGCAAACCCAACTAAAATAAACAATCACAGAAGTGCTGATAGTGATCATTCAAGTGATGTGGACAATAGAAGTAATGGTGAAGTTGGGACTGATTTGCGACGAGATTCTCATGGTGACCAGAATCCATCAATAGTTGGAATTCTTGGTGATCAACAAAATCATGCAGAACAGCGTCTGGCGGCTCGAAGGGCGGCGCGCGCGGAGGCGCGTGAGATCCGTATGCGAGAGTTGGAGAGGCAGCAACGTGAACAGGAAGACCATGCTGACAAAGCGTACGACATGTACGGCAACTCTGCTAGCCTGCGAGCTACAGCCTCTGACTTTAAAGATTCAGTTGGTCGTCGTGCAGGCACGCGGCTTTCTAGTTTAGGTTCGGGCGCGGGATCGCTGCACTCACCTAGACGCAGCTCGGAAGACTCTGCTGACGACGCCTTCAGTGTCAAAGATCTCAGGCATGAGCTGAAAGAGGTAGAGGAGAAGTTTCGCAAGGCGATGATACTGAACGCGCAACTGGATAACGACAAGGCGGCGCTCGGCTACCAGCTGGAACTGCTCAAGGACCGGATAGAGGAGTTACACGAGGAGTACGCGCAGCTGCAGCGCGAGCATAGAGAAAAATGTTCAGCCCACGAGCGGTTGAAACGCGAACACGCATCCCTCGAGCGGGAGGTGTGCGCGGCGCGTGATGCGATCCGCGCGCGGGACGCCGCCGCCGCGCACGCGGGATACGCCTTCGTGGACGCGGCCGTGCGCGGGACCAACGGGGACGTGCGCGGGACCAACGGGGACTCGCGCGGGACCAACGGGGACGCGGATGGAGATGACTGCGCGCCCGGCTTCGGTTCCGTGCCGCCTCTGGCGCTAGTGTCGCACCAGTCCGAGCAAATGCTCAACGAAGCTGGCGAAGGAACTTTAGACGTCCGGTTGCAGAAGTTACTCGCATCGAAACAGGCGTTAGAGTCGGAGGTGCGCAAGTTGAAGCTTCAACTGAACGAGGAGCGGGCCGCCACACATAACGGCGTCCACTCTCAACACGATCAGGAGTACGAGAACGAACTGGAAACGCTGAAGCGATGCGTATCGGAAGCTAAAGCGCGGGCGGCGCGCGCCGAGGCCGAGGCTGCGCTTCAAGGCGCCTGCGTGGCGCGGCTCGAGGCACAGGTGGCGCGCCTGAGGGCGAGGCAGGACCACCAGGACGAACACGAGGAGCAGCTCAAGCTCGAGCGTCGGCGGCTGCAGCGCGAGGAAGTCGTTGACTTCTGGGCCGTTATCAATAATGGCGGCAGTTAA
- Protein Sequence
- MILIKLSEMATPDNSDEENDGAFTDGDFDESDEETVIEQVGEKSQIPVNETVNSDVQKENVKLSRQSSNGYANPTKINNHRSADSDHSSDVDNRSNGEVGTDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYGNSASLRATASDFKDSVGRRAGTRLSSLGSGAGSLHSPRRSSEDSADDAFSVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSAHERLKREHASLEREVCAARDAIRARDAAAAHAGYAFVDAAVRGTNGDVRGTNGDSRGTNGDADGDDCAPGFGSVPPLALVSHQSEQMLNEAGEGTLDVRLQKLLASKQALESEVRKLKLQLNEERAATHNGVHSQHDQEYENELETLKRCVSEAKARAARAEAEAALQGACVARLEAQVARLRARQDHQDEHEEQLKLERRRLQREEVVDFWAVINNGGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00284562;
- 90% Identity
- -
- 80% Identity
- -