Elac009610.1
Basic Information
- Insect
- Eudonia lacustrata
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_947562085.1
- Location
- OX387314.1:2331216-2345128[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-79 4.3e-75 253.7 17.5 1 268 126 398 126 419 0.85 2 2 1 3.3e+04 -8.0 18.5 1 48 418 464 418 492 0.70
Sequence Information
- Coding Sequence
- ATGGGCAAGCGGTCCGCGATGGCAACGCCTGATAACAGTGATGAAGAAGGTGGAGACGCCTTCACAGACGGAGACTTCGATGATACAGACGAAGAAACGGTCGTGGAACGACTCGGAGACTCGCATAAGTCTCAAATCCCTGTTAATGAAACTGTCAATTCTGAAGTAAAAAAAGAAAATGGACTTTTGTCTAGACAACACTCTAATGGATATGCAGAACCGTCTAAAGTAAATGGACACAAAAGTACTGAAAATGGTCTTTCAAGTGATGTGGACATTCGTAGTAGTGATGAAGCTGGAGCAGATTTGCGAAGAGATTCTCATGGCGACCAAAACCCCTCCATAGTTGGAATTCTTGGAGATCAACAAAATCATGCGGAACAGCGGCTAGCGGCGCGGCGGGCGGCGCGCGCCGAGGCGCGGGAGATCCGCATGCGGGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCCTACGACATGTACGCGGGCGGCACCCGCACCGCCGCCGACTTCAAAGAGTCGGTGGGACGACGCGGCGGCGCGCGGCTGGCGGCGCTGAGCCCTGCCGCGCTGCACTCGCCGCGCCGCAGCTCCGAGGACTCCGCCGACGACGCCTTCAGCATCAAGGACCTCAGGCATGAGCTGAAAGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTGGGCTACCAGCTGGAGCTGCTCAAGGACCGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGGGAGCACAAAGAGAAGTGTTCGTCCCACGAGCGGCTGAAGCGCGAGCACGTGTCCCTGGAGCGGGAGGTCCGGTGCGCGCGGGACGCGGTGCGCGCGCGGGACGCGGCCGCGGCGCACGCGGGGTTCGCGTTCGTGGACGCGGCGCCCGCGGGGACAGGGGGGGGGGCGCCCGGCTTCGGGGAGGTGCCCGCGCTGGCGCTGGTCTCGCACGAGTCCGAGCAGATGTTGAACGACGCGGGCGAGGGGACGCTGGACGTGCGGTTGCAGAAGCTGCTAGGGTCAAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTCAAGCTGCAGCTCAACGAGGAGCGCGCCGCCACGCACAACGGCGTCGCCTCCCACCACGACCAGGAGTACGAGACGGAGCTGGAAACGCTCCGGCGATGTGTATCCGAAGCAAAGGGGAGGGCAGCGCGCGCCGAAGCCGAAGCCGCATTACAAGCCGCGGCCGTCGCGCGACTCGAGGCGCAGGTGGCCAGGCTGCGGGCCAGGCAGGACCACCAGGACGAGCACGAGGAACAGCTCAAGCAGGAGCGCCGCCGCCTGCAGCGAGAGGCGCGGGAAGCCCTGAACCGAGTAGAGGAGCTGGAAACGGAGAACAGCCACCTGACGAAGCGGCTCGACAAGCTCAAGAACGCCAAGTCCGCGCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MGKRSAMATPDNSDEEGGDAFTDGDFDDTDEETVVERLGDSHKSQIPVNETVNSEVKKENGLLSRQHSNGYAEPSKVNGHKSTENGLSSDVDIRSSDEAGADLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGGTRTAADFKESVGRRGGARLAALSPAALHSPRRSSEDSADDAFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSHERLKREHVSLEREVRCARDAVRARDAAAAHAGFAFVDAAPAGTGGGAPGFGEVPALALVSHESEQMLNDAGEGTLDVRLQKLLGSKQALESEVRKLKLQLNEERAATHNGVASHHDQEYETELETLRRCVSEAKGRAARAEAEAALQAAAVARLEAQVARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00284562;
- 90% Identity
- iTF_00683380;
- 80% Identity
- -