Cnup053409.1
Basic Information
- Insect
- Catocala nupta
- Gene Symbol
- -
- Assembly
- GCA_963675205.1
- Location
- OY776106.1:11904855-11906327[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.8e-10 3.3e-07 31.7 0.0 2 40 18 55 17 60 0.88
Sequence Information
- Coding Sequence
- ATGCCTCTTACTTACAAACGCAAAAGTAGTGTATGTCGAGGTGAATGGTCTGAAAAGGCATTGAATGATGCGTTTGAAGCTGTTTCCAATGGAATGGGGGTTAATGAATCCGCCAAAACATTTGGTATTCCCAAAACAACTCTTAAGCGAAGACTTGCTAACAAAaatttgacaaaaaattatgttctCGGTCCATGTGGTATACTGCTGCCGGAAAACGAAAAAATGTTGAAGATTGTGATGCACATTAATAAGTTACAAAAAAGTGGATTTACACCTTCGAGGCAAGCAGTGCGTAAAATGGCATATAATTTAGCAGGAAAACTTCAAATTAAACATAACTTTAATCACGATAAGAAAATGGCTGGAAATGGTTGGTTACAAAGTTTTCTTCGCCGAAACACGGAACTTTCAATTCGACAGTCAGAAGGTGTCTCTGTGGCCAGGGCTAAGGGGATGAATAAAGAATACGTTGATAAGTATTTCAACCTTTTAGAAGACATTTTGAACGAGAATAACCTTTTCGACAAACCCGGCTCTATTTTTAACATGGATGAAACAGGACTGCAGTTAAATAATAAGCCGGGCAAAGTAGTTGCCGTAAAGGGTTCCAAAAGTGTCCCTAACATAACTGCTGGGGAAAAGGGTGAAACCATTTCTGTAATCGCGTGCTGCAGCGGAGAATGGGTTTTTCTTCCACCTTATTGCATATTTAAgggaaaaaataaaaagcttgagTTTGAGGACGGTATGCCACCAGGTTCTGTGGTGGCTATGTCACAGAAATCTGCTTACGTAAATTCAGAAATATTCTTTGACTGGCTGAAAAATCACTTCTTGCCCCGCAAACCTCAAGGTAAGTGCGTATTGATCCTTGATGGACATTCTTCACATTGCAGCAATGTGGAAATGTTGGAGTACGCTGAAGAAAATGGAATTATTTTAGTTTGCTTGCCTAGTCATACAACGCATTATCTCCAACCACTCGATAGGATATTTTTTAAGTCCCTgaaatgcttttattatgaGGAATGTAACAGATTCATTGCTACTAACCCAACAAGAAAATTAACACGATTGCAGTTTGGTAAGCTCCTGGCTTCAGCTTGGAATAAATCAGCTTCAGTGAGCAATGCCATATCAGGATTCTCAGCAACTGGAATCAtaccttttaataaaaatgctataCCTGACTATGCTTTCTTAAAGTCAACTAACCCAGATGACAATGAGCAACAAACTGTTGCCACAATTGAACAGGATCAACCTTCTGAGGAGTCAGTCCCAGCACAACTGGCTAGAGTAACGGCTCAAATACCATCATCTAGTGAAGCTGTTTGTCCTAAGCCGACGCCAGGAAAGATTTTAGATATAATCACTCCAATCCCTATCATAGAACGATCTGCAAATGTCCGTCATAGGTCAAGAAAAATAGCAGAAATTTTAATTCAACTGAAAATATTCAGACATTGA
- Protein Sequence
- MPLTYKRKSSVCRGEWSEKALNDAFEAVSNGMGVNESAKTFGIPKTTLKRRLANKNLTKNYVLGPCGILLPENEKMLKIVMHINKLQKSGFTPSRQAVRKMAYNLAGKLQIKHNFNHDKKMAGNGWLQSFLRRNTELSIRQSEGVSVARAKGMNKEYVDKYFNLLEDILNENNLFDKPGSIFNMDETGLQLNNKPGKVVAVKGSKSVPNITAGEKGETISVIACCSGEWVFLPPYCIFKGKNKKLEFEDGMPPGSVVAMSQKSAYVNSEIFFDWLKNHFLPRKPQGKCVLILDGHSSHCSNVEMLEYAEENGIILVCLPSHTTHYLQPLDRIFFKSLKCFYYEECNRFIATNPTRKLTRLQFGKLLASAWNKSASVSNAISGFSATGIIPFNKNAIPDYAFLKSTNPDDNEQQTVATIEQDQPSEESVPAQLARVTAQIPSSSEAVCPKPTPGKILDIITPIPIIERSANVRHRSRKIAEILIQLKIFRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00448994; iTF_01029172; iTF_00888195; iTF_00973702; iTF_00836469; iTF_00172670; iTF_00771854; iTF_00281111; iTF_00032840; iTF_00032841; iTF_00033748; iTF_00147354; iTF_00147324;
- 90% Identity
- iTF_00281111;
- 80% Identity
- -