Anig003135.1
Basic Information
- Insect
- Aporophyla nigra
- Gene Symbol
- -
- Assembly
- GCA_947507805.1
- Location
- OX382300.1:2577815-2579239[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-08 8.6e-06 26.0 0.0 9 37 11 38 8 45 0.85
Sequence Information
- Coding Sequence
- ATGGACAGAAAGAGCATTTGCGTTGATGCTTTTCAAGCTTTTTCTAATGGAATGGGTATCAATGAAGCAGCAAAAACATTTGGGATACCTAAAACTACATTTAAACGAAGACTTGCAAAAAATTCCTTGACTAAAAGCGATGTTCTCGGTCCCAGTGGTATACTGCTGCCTGAATATGAGAAGAAGATCGTCGTACACATTAAAAAATTAGAGAAAAGTGGGTTTACGCCATCAAGAGAAACAGTGCGTAAAATGGCATATAATTTAGCGGAAAGACTTCATATTAAACATAACTTTAATCACGAAAAGAAAATGGCGGGAAATGGGTGGTTACAAAGCTTTCTTAGACGAAACAATGAACTTTCAATCCGGCAGTCAGAAGGTGTCTCTGTGGCCAGGGCTAAGGGGATGAATAAAGAATATGTTGATAAGTATTTCAACCTTTTAGAAGAAGTTTTGAAAGAAAATCAACTTTTTGACAAACCTGGCTCTATTTTTAATATGGACGAGACAGGCTTGCAGCTAAATAATAAGCCGGGGAAAGTAGTTGCCGTGAAGGGATCGAAAAATGTTCCTAACATAACTGCTGGGGAAAAAGGTGAAACCATTTCGGTCATCGCTTACTGCAGTGGAGAAGGTGTTTTTCTTCCACCCTATTGCATATTCAAGGGCAAAAATAAAAAACCTGAGTTTGAGGATGGCATGCCACCCGGCTCTGTGGTAACAATGTCACAAAAATCAGCATATGTGAATTCAGAAATATTTTTTGATTGGCTGAAGCATCATTTTTTGCCAAGGAAACCACAAGGTAAGTGCGTGTCGATCCTTGATGGACATTCTTCACACTGCAGCAATGTGGAAATGTTGGAGTTTTCTGAAGAAAACGAAATCATTTTGATTTGCTTACCCAGTCACACAACCCATTTCCTTCAGCCGCTTGATAGAACGTTTTTCAAGTCCCTGAAATGCTTTTATTGTGACGAATGCAATAAATTCATTACTGCTAACCCATCAAGAAAACTATCACGCTTGCAGTTTGGAAAAATTCTGGCTTCAGCTTGGAATAAATCAGCTTCAGTGAGCAATGCAATATCAGGTTTTTCAGCAACTGGGATCATACCGTTTAATGCAAACGCCATACCGGACTATGCTTTCTTAACTCCAAGTAACCAAAACCATGACAATAACCTACAAACTGCTGCTATAATTCAACATGATCAACCTACTAAAGAATCAGTCCTTTCACAGCCAGCACCCGTTCAAAAACCATCAACTAGTGAAGCTGTTTTTCCAAAGGCAACGCCTGGAAAGATTTTAGATGTGGTTTCTCCAATACCTATCATAGAAAGAACTGCAAACGTCCGTCATAGGTCAAGAAAAATAGCAGAAATTTTGAACTCTACTGAAAATATTCAGAATTTATAA
- Protein Sequence
- MDRKSICVDAFQAFSNGMGINEAAKTFGIPKTTFKRRLAKNSLTKSDVLGPSGILLPEYEKKIVVHIKKLEKSGFTPSRETVRKMAYNLAERLHIKHNFNHEKKMAGNGWLQSFLRRNNELSIRQSEGVSVARAKGMNKEYVDKYFNLLEEVLKENQLFDKPGSIFNMDETGLQLNNKPGKVVAVKGSKNVPNITAGEKGETISVIAYCSGEGVFLPPYCIFKGKNKKPEFEDGMPPGSVVTMSQKSAYVNSEIFFDWLKHHFLPRKPQGKCVSILDGHSSHCSNVEMLEFSEENEIILICLPSHTTHFLQPLDRTFFKSLKCFYCDECNKFITANPSRKLSRLQFGKILASAWNKSASVSNAISGFSATGIIPFNANAIPDYAFLTPSNQNHDNNLQTAAIIQHDQPTKESVLSQPAPVQKPSTSEAVFPKATPGKILDVVSPIPIIERTANVRHRSRKIAEILNSTENIQNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00281108;
- 90% Identity
- iTF_00000252;
- 80% Identity
- -