Mper000227.1
Basic Information
- Insect
- Melanchra persicariae
- Gene Symbol
- -
- Assembly
- GCA_947386135.1
- Location
- OX376652.1:4541747-4542919[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-09 1.1e-06 28.7 0.0 3 37 19 52 17 59 0.88 2 2 7.8 3.7e+03 -1.8 0.0 14 22 140 148 125 148 0.57
Sequence Information
- Coding Sequence
- ATGCCTTTAACATATAAGAGGAAAAGTGGAGTATGTAGAGGAGAATGGACAGAAAGAGCATTAATTGATGCTTTTCAAGCTTTTTCTAATGGAATGGGTATCAATGAAGCAGCAAAAACATTTGGGATACCTAAAACTACATTTAAACGAAGACTTGCAAAAAATTCCTTGACTAAAAGCGATGTTCTCGGTCCCAGTGGTATACTGCTGCCTGAAAATGAGAAGAAGATCGTCGTACACATTAAAAAATTACAGAAAAGTGGGTTTACGTCATCAAGAGAAACAGTGCGTAAAATGGCATATAATTTAGCGGAAAGACTTCATATTAAACATAACTTTAATCACGAAAAGAAAATGGCGGGAAATGGGTGGTTACAAAGCTTTCTTAGACGAAACAATGAACTTTCAATCCGGCAGTCAGAAGGTGTATCTGTGGCCAGGGCTAAGGGGATGAATAAAGAATATGTTGATAAGTATTTCAACCTTTTAGAAGAAGTTTTGAAAGAAAATCAACTTTTTGACAAACCTGGCTCTATTTTTAATATGGACGAGACAGGCTTGCAGCTAAATAATAAGCCTGGGAAAGTAGTTGCCGTGAAGGGATCGAAAAATGTTCCTAACATAACTGCTGGGGAAAAAGGTGAAACCATTTCGGTCATCGCTTGCTGCAGTGGAGAAGGTGTTTTTCTTCCACCCTATTGCATATTCAAGGGCAAAAATAAAAAACCTGAGTTTGAGGATGGCATGCCACCCGGCTCTGTGGTAACAATGTCACAAAAATCAGCATATGTGAATTCAGAAATATTTTTTGATTGGCTGAAGCATCATTTTTTGCCAAGAAAACCACAAGGTAAGTGCGTGTTGATCCTTGATGGACATTCTTCACACTGCAGCAATGTGGAAATGTTGGAGTTTGCTGAAGAAAACGAAATCATTTTGATTTGCTTACCCAGTCACACAACCCATTTCCTTCAGCCGCTTGATAGAACGTTTTTCAAGTCCCTGAAATGCTTTTATTATGACGAATGCAATAAATTCATTACTGCTAACCCATCAAGAAAACTATCACGCTTGCAGTTTGGAAAAATTCTGGCTTCAGCTTGGAATAAATCAGCTTCAGTGAGCAATGCAATATCAGGTTTTTCAGCAACTGGGATCGATCATACCGTTTAA
- Protein Sequence
- MPLTYKRKSGVCRGEWTERALIDAFQAFSNGMGINEAAKTFGIPKTTFKRRLAKNSLTKSDVLGPSGILLPENEKKIVVHIKKLQKSGFTSSRETVRKMAYNLAERLHIKHNFNHEKKMAGNGWLQSFLRRNNELSIRQSEGVSVARAKGMNKEYVDKYFNLLEEVLKENQLFDKPGSIFNMDETGLQLNNKPGKVVAVKGSKNVPNITAGEKGETISVIACCSGEGVFLPPYCIFKGKNKKPEFEDGMPPGSVVTMSQKSAYVNSEIFFDWLKHHFLPRKPQGKCVLILDGHSSHCSNVEMLEFAEENEIILICLPSHTTHFLQPLDRTFFKSLKCFYYDECNKFITANPSRKLSRLQFGKILASAWNKSASVSNAISGFSATGIDHTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00281108;
- 90% Identity
- iTF_00448994; iTF_00888195; iTF_00771854;
- 80% Identity
- -