Lcom024032.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282477.1:22661226-22662473[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.2e-09 5.3e-06 27.2 0.0 2 41 18 56 17 60 0.88
Sequence Information
- Coding Sequence
- ATGCCTTTAACATATAAGAGGAAAAGTGGAGTATGTAGAGGAGAATGGACAGAAAGAGCATTAATTGATGCTTTTCAAGCTGTTTCTAATGTAATGGGTATCAATGAAGCAGCAAAAACATTTGGGATACCTAAAACTACATTTAAACGAAGACTTGCAAAAAACTACTTGACTAAAAGCGATGTTCTCGGTCCCAGTGGTATACTGCTGCCTGAAAATGAGAAGAAGATCGTCGTACACATTAAAAAACTACAGAAAAGTGGGTTTACGCCATCAAGAGAAACAGTGCGTAAAATGGCATATAATTTAGCGGAAAGACTTCATATTAAACATAACTTTAATCACGAAAAGAAAATGGCGGGAAATGGGTGGTTACAAAGCTTTCTTAGACGAAACAATGAACTTTCAATCCGGCAGTCAGAAGGTGTCTCTGTGGCCAGGGCTAAGGGGATGAATAAAGAATATGTTGATAAGTATTTCAACCTTTTAGAAGAAGTTTtgaaagaaaatcaactttttgACAAACCTGGCTCTATTTTTAATATGGACGAAACAGGCTTGCAGCTAAATAATAAACCGGGGAAAGTAGTTGCCGTGAAGGGATCGAAAAATGTTCCTAACATAACTGCTGGGGAAAAAGGTGAAACCATTTCGGTCATTGCTTGCTGCAGTGGAGAAGGTGTTTTTCTTCCACCCTATTGCATATTCAAgggcaaaaataaaaagcatgaGTTTGAGGATGGCATGCCACCCGGCTCTGTGGTAACAATGTCACAAAAATCAGCATATGTgaattcagaaatattttttgattggCTGAAGCATCATTTTTTGCCAAGGAAACCACAAGGTAAGTGCGTGTTGATCCTTGATGGACATTCTTCACACTGCAGCAATATGGAAATGTTGGAGTTTGCTGAAGAAAACGAAATCATTTTGATTTGCTTACCCAGTCACACAACCCATTTCCTTCAGCCGCTTGATAGAACGTTTTTCAAGTCCCTGAAATGCTTTTATTATGACGAATGCAATAAATTCATCACTGCTAACCCATCAAGAAAACTATCACGCTTGCAGTTTGGAAAAATTCTGGCTTCAGCTTGGAATAAATCAGCTTCAGTGAGCAATGCAATATCAGGTTTTTCAGCAACTGGGATCATACCGTTTAATGCAAACGCCACATCAGACTATGCTTTCTTAAACCAAGTAACCAAAACCATGACAATAACCTACAAACTGCTGCTATAA
- Protein Sequence
- MPLTYKRKSGVCRGEWTERALIDAFQAVSNVMGINEAAKTFGIPKTTFKRRLAKNYLTKSDVLGPSGILLPENEKKIVVHIKKLQKSGFTPSRETVRKMAYNLAERLHIKHNFNHEKKMAGNGWLQSFLRRNNELSIRQSEGVSVARAKGMNKEYVDKYFNLLEEVLKENQLFDKPGSIFNMDETGLQLNNKPGKVVAVKGSKNVPNITAGEKGETISVIACCSGEGVFLPPYCIFKGKNKKHEFEDGMPPGSVVTMSQKSAYVNSEIFFDWLKHHFLPRKPQGKCVLILDGHSSHCSNMEMLEFAEENEIILICLPSHTTHFLQPLDRTFFKSLKCFYYDECNKFITANPSRKLSRLQFGKILASAWNKSASVSNAISGFSATGIIPFNANATSDYAFLNQVTKTMTITYKLLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00281108;
- 90% Identity
- iTF_00973702;
- 80% Identity
- -