Basic Information

Insect: Cantharis nigra
Gene Symbol: -
Assembly: GCA_958510845.1
Location: OY294029.1:49868226-49870172[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.17 3.8e+02 2.2 0.0 21 45 88 112 79 119 0.82

2 20 0.051 1.1e+02 3.8 0.0 20 45 115 140 112 147 0.83

3 20 0.06 1.3e+02 3.6 0.0 21 51 144 174 140 177 0.84

4 20 1.4 3e+03 -0.7 0.0 23 46 174 197 170 205 0.76

5 20 0.0026 5.7 8.0 0.2 22 52 201 231 192 232 0.83

6 20 0.023 50 5.0 0.0 22 47 229 254 226 259 0.84

7 20 0.34 7.4e+02 1.2 0.1 21 44 256 279 252 284 0.84

8 20 0.025 54 4.9 0.0 21 52 284 315 279 316 0.85

9 20 3.6 7.8e+03 -2.1 0.0 22 43 313 334 310 339 0.74

10 20 0.0048 11 7.1 0.0 21 52 340 371 332 373 0.85

11 20 0.19 4.2e+02 2.0 0.1 21 47 368 394 365 399 0.83

12 20 0.043 93 4.1 0.0 21 52 396 427 391 429 0.87

13 20 0.35 7.6e+02 1.2 0.1 21 52 424 455 420 457 0.79

14 20 0.16 3.5e+02 2.3 0.1 23 52 454 483 446 485 0.85

15 20 0.057 1.2e+02 3.7 0.0 22 46 481 505 478 511 0.85

16 20 0.0088 19 6.3 0.0 21 46 508 533 504 540 0.85

17 20 1.3 2.9e+03 -0.7 0.0 21 45 536 560 532 568 0.79

18 20 0.79 1.7e+03 0.0 0.1 21 47 564 590 555 595 0.74

19 20 0.00061 1.3 10.0 0.2 22 52 593 623 584 624 0.85

20 20 0.016 34 5.5 0.0 22 45 621 644 617 648 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.17	3.8e+02	2.2	0.0	21	45	88	112	79	119	0.82
2	20	0.051	1.1e+02	3.8	0.0	20	45	115	140	112	147	0.83
3	20	0.06	1.3e+02	3.6	0.0	21	51	144	174	140	177	0.84
4	20	1.4	3e+03	-0.7	0.0	23	46	174	197	170	205	0.76
5	20	0.0026	5.7	8.0	0.2	22	52	201	231	192	232	0.83
6	20	0.023	50	5.0	0.0	22	47	229	254	226	259	0.84
7	20	0.34	7.4e+02	1.2	0.1	21	44	256	279	252	284	0.84
8	20	0.025	54	4.9	0.0	21	52	284	315	279	316	0.85
9	20	3.6	7.8e+03	-2.1	0.0	22	43	313	334	310	339	0.74
10	20	0.0048	11	7.1	0.0	21	52	340	371	332	373	0.85
11	20	0.19	4.2e+02	2.0	0.1	21	47	368	394	365	399	0.83
12	20	0.043	93	4.1	0.0	21	52	396	427	391	429	0.87
13	20	0.35	7.6e+02	1.2	0.1	21	52	424	455	420	457	0.79
14	20	0.16	3.5e+02	2.3	0.1	23	52	454	483	446	485	0.85
15	20	0.057	1.2e+02	3.7	0.0	22	46	481	505	478	511	0.85
16	20	0.0088	19	6.3	0.0	21	46	508	533	504	540	0.85
17	20	1.3	2.9e+03	-0.7	0.0	21	45	536	560	532	568	0.79
18	20	0.79	1.7e+03	0.0	0.1	21	47	564	590	555	595	0.74
19	20	0.00061	1.3	10.0	0.2	22	52	593	623	584	624	0.85
20	20	0.016	34	5.5	0.0	22	45	621	644	617	648	0.89

Sequence Information

Coding Sequence: ATGGTAAAATGTTGGTTACAGGAATCCCTGTGCGATTCAAAGAGTTACCTTCACGTTAAGACGGAAGAAGTGGAATTGAAGACGGAAGATCTGCATCATTCGATTGATATTAAAGAAGACACTTCATTTCTCCACCTAACCGGATTCCCACCGGATAGAGAATGTAAACTACAAATAATCCGGAAACCATTTTCATGTGAAACTTGCGGCCACATCTCGAAAACTAAGAGCGACTTTAGTAGGCATGCAAGAACTCACACAGGGGAAAAACCATTTCCATGCGAAATGTGCGACTATCAGTGTTCGAAtaaaggaaatctaaagaagCATTTAATAACTCATACTAGTGAAAAACcattttcttgtaaaatttgtgacttCACCACTGCACATAAGGAAAGCTTGAAAATGCATTTGAGGACGCATACAGGCGAGAAGCCTTACAtgtgtgaaatttgtgattttgCGTTTCCGGCTACGGGATCTCTAAACAGGCATTTAAAAACTCATACTGGCGGGAAACCGTTCATGTGTGACATTTGTGACTTCCAAAGTGGCAGTCAAGCTGACTTGAAACGGCATGTAAGAACTCACACTGGCGATAAGCCTTACATATGCGAAATTTGTGACTTTAAGTCTTCCGAAAGAGGAAATTTACGCAGACATTTAAGAATTCACACCGGCGACAAACCGTATCCGTGTGAAATTTGCGGATTTAAATTTTCGGATCAAGGAAACTTGAAAAGGCATTTAAAGACTCATACCGGAGAGAAACCATTTAACTGTGAAATTTGCGATTTCAGATGTGCGGTTAAGGAGGATTTAAAACGTCATTTTAGGAcgcataccggggaaaaaccgtttacgTGCGAGACGTGCGGCTATAAATGCTCggataagggaaatttaaaaaagcatttagTAACTCACACCGTCGAGAAGCCATTTTCGTGTGAATTGTGCATTTTCACCACTGCACATAGAGAAAGTTTGAAAAGTCATGTGAAAACCCACACAGGCGAAAAACCATTCGCATGTGATATCTGTTCATTTAAATTTGCCGTTAAGCAAGATCTAAAGAGGCATTTAAGAATtcacaccggggaaaaaccgtatgcatgtgaaatttgtgacttcAAATGTGCGCAAAGAGGATACTTAAAAACGCATATGGcaattcataccggcgaaaagccgtttTCATGTGAATTTTGCGCCTTCACGACTGCGCAGAgggaaaacttgaaaattcacatcagaattcataccggcgagaagccGTTTGGTTGTGAATTTTGCGAATACAAATGTGGAAGGAAGGAAGACTTAAATAGGCActtaagaactcatactggtAGTAAACCGTATGCCTGTAagatttgcgattttaaatgttcgttggcgggaaatttgaaaaaccatATGAAAATTCATACTGGTGACAAACCGCATGcgtgtgaaatttgtgaatCAAAATATGCTGATAAAGCAGGTTTAAAGAGACATTTAAGAACCCATacaggggaaaaaccgtttcTTTGCGATATATGTAGTTTTAAATCATCAGATGAAAGGAATTTAAAAACTCATTTGATGACTCATACAGGTGAGAAACCGTTTTCTTGTGAATTTTGTGCTTTTACCACTGCGCATAGAGCAAGCTTAAGATCCCATATAaggactcatactggcgagaaaccgttcgaGTGTGAATTTTGTGAATATAAATGTGCAAGGAAGGAAGATTTAAACAGGCATGTAAGGACTCATACCGGTAGCAAACCGTTCACATGTGATTTTTGCAACTTTACCTGTGCAGAAAGAGGAAATTTACGGCGGCATTTAAGAATTCATACTGGAGACAAGCCGTATTCGTGTGAATTTTGTGGCTCAAAATTTGGAGATAACAGGAATTTTAAAAGGCATTTAAGGACTCATGCTGCTTAG
Protein Sequence: MVKCWLQESLCDSKSYLHVKTEEVELKTEDLHHSIDIKEDTSFLHLTGFPPDRECKLQIIRKPFSCETCGHISKTKSDFSRHARTHTGEKPFPCEMCDYQCSNKGNLKKHLITHTSEKPFSCKICDFTTAHKESLKMHLRTHTGEKPYMCEICDFAFPATGSLNRHLKTHTGGKPFMCDICDFQSGSQADLKRHVRTHTGDKPYICEICDFKSSERGNLRRHLRIHTGDKPYPCEICGFKFSDQGNLKRHLKTHTGEKPFNCEICDFRCAVKEDLKRHFRTHTGEKPFTCETCGYKCSDKGNLKKHLVTHTVEKPFSCELCIFTTAHRESLKSHVKTHTGEKPFACDICSFKFAVKQDLKRHLRIHTGEKPYACEICDFKCAQRGYLKTHMAIHTGEKPFSCEFCAFTTAQRENLKIHIRIHTGEKPFGCEFCEYKCGRKEDLNRHLRTHTGSKPYACKICDFKCSLAGNLKNHMKIHTGDKPHACEICESKYADKAGLKRHLRTHTGEKPFLCDICSFKSSDERNLKTHLMTHTGEKPFSCEFCAFTTAHRASLRSHIRTHTGEKPFECEFCEYKCARKEDLNRHVRTHTGSKPFTCDFCNFTCAERGNLRRHLRIHTGDKPYSCEFCGSKFGDNRNFKRHLRTHAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00270690; iTF_00271510; iTF_00270111;
90% Identity: iTF_00271510;
80% Identity: iTF_00271510;