Basic Information

Insect: Cantharis nigra
Gene Symbol: -
Assembly: GCA_958510845.1
Location: OY294029.1:49868226-49870172[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.00041 0.021 16.1 3.0 1 23 64 86 64 86 0.98

2 21 1.5e-05 0.00077 20.6 2.0 1 23 92 114 92 114 0.98

3 21 8e-05 0.0042 18.3 3.1 1 23 120 142 120 142 0.98

4 21 0.00011 0.0055 17.9 0.1 1 23 148 170 148 170 0.98

5 21 0.00025 0.013 16.7 0.3 1 23 176 198 176 198 0.98

6 21 5.5e-05 0.0029 18.8 0.4 1 23 204 226 204 226 0.98

7 21 4.9e-08 2.6e-06 28.4 0.6 1 23 232 254 232 254 0.98

8 21 0.00052 0.027 15.7 2.8 1 23 260 282 260 282 0.98

9 21 1.5e-05 0.00079 20.6 2.9 1 23 288 310 288 310 0.98

10 21 0.18 9.2 7.8 2.1 1 23 316 338 316 338 0.98

11 21 5.6e-05 0.003 18.8 0.5 1 23 344 366 344 366 0.97

12 21 0.00023 0.012 16.8 0.7 1 23 372 394 372 394 0.97

13 21 0.00076 0.04 15.2 0.4 1 23 400 422 400 422 0.98

14 21 0.0013 0.069 14.5 2.7 3 23 430 450 428 450 0.98

15 21 8.1e-05 0.0042 18.3 1.4 1 23 456 478 456 478 0.98

16 21 0.0002 0.011 17.0 0.6 1 23 484 506 484 506 0.96

17 21 0.0022 0.11 13.8 1.0 1 23 512 534 512 534 0.96

18 21 0.0029 0.15 13.4 2.1 1 23 540 562 540 562 0.98

19 21 7.9e-05 0.0041 18.3 2.7 1 23 568 590 568 590 0.98

20 21 0.00027 0.014 16.6 2.9 1 23 596 618 596 618 0.98

21 21 3.7e-05 0.0019 19.3 2.4 1 23 624 646 624 646 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.00041	0.021	16.1	3.0	1	23	64	86	64	86	0.98
2	21	1.5e-05	0.00077	20.6	2.0	1	23	92	114	92	114	0.98
3	21	8e-05	0.0042	18.3	3.1	1	23	120	142	120	142	0.98
4	21	0.00011	0.0055	17.9	0.1	1	23	148	170	148	170	0.98
5	21	0.00025	0.013	16.7	0.3	1	23	176	198	176	198	0.98
6	21	5.5e-05	0.0029	18.8	0.4	1	23	204	226	204	226	0.98
7	21	4.9e-08	2.6e-06	28.4	0.6	1	23	232	254	232	254	0.98
8	21	0.00052	0.027	15.7	2.8	1	23	260	282	260	282	0.98
9	21	1.5e-05	0.00079	20.6	2.9	1	23	288	310	288	310	0.98
10	21	0.18	9.2	7.8	2.1	1	23	316	338	316	338	0.98
11	21	5.6e-05	0.003	18.8	0.5	1	23	344	366	344	366	0.97
12	21	0.00023	0.012	16.8	0.7	1	23	372	394	372	394	0.97
13	21	0.00076	0.04	15.2	0.4	1	23	400	422	400	422	0.98
14	21	0.0013	0.069	14.5	2.7	3	23	430	450	428	450	0.98
15	21	8.1e-05	0.0042	18.3	1.4	1	23	456	478	456	478	0.98
16	21	0.0002	0.011	17.0	0.6	1	23	484	506	484	506	0.96
17	21	0.0022	0.11	13.8	1.0	1	23	512	534	512	534	0.96
18	21	0.0029	0.15	13.4	2.1	1	23	540	562	540	562	0.98
19	21	7.9e-05	0.0041	18.3	2.7	1	23	568	590	568	590	0.98
20	21	0.00027	0.014	16.6	2.9	1	23	596	618	596	618	0.98
21	21	3.7e-05	0.0019	19.3	2.4	1	23	624	646	624	646	0.99

Sequence Information

Coding Sequence: ATGGTAAAATGTTGGTTACAGGAATCCCTGTGCGATTCAAAGAGTTACCTTCACGTTAAGACGGAAGAAGTGGAATTGAAGACGGAAGATCTGCATCATTCGATTGATATTAAAGAAGACACTTCATTTCTCCACCTAACCGGATTCCCACCGGATAGAGAATGTAAACTACAAATAATCCGGAAACCATTTTCATGTGAAACTTGCGGCCACATCTCGAAAACTAAGAGCGACTTTAGTAGGCATGCAAGAACTCACACAGGGGAAAAACCATTTCCATGCGAAATGTGCGACTATCAGTGTTCGAAtaaaggaaatctaaagaagCATTTAATAACTCATACTAGTGAAAAACcattttcttgtaaaatttgtgacttCACCACTGCACATAAGGAAAGCTTGAAAATGCATTTGAGGACGCATACAGGCGAGAAGCCTTACAtgtgtgaaatttgtgattttgCGTTTCCGGCTACGGGATCTCTAAACAGGCATTTAAAAACTCATACTGGCGGGAAACCGTTCATGTGTGACATTTGTGACTTCCAAAGTGGCAGTCAAGCTGACTTGAAACGGCATGTAAGAACTCACACTGGCGATAAGCCTTACATATGCGAAATTTGTGACTTTAAGTCTTCCGAAAGAGGAAATTTACGCAGACATTTAAGAATTCACACCGGCGACAAACCGTATCCGTGTGAAATTTGCGGATTTAAATTTTCGGATCAAGGAAACTTGAAAAGGCATTTAAAGACTCATACCGGAGAGAAACCATTTAACTGTGAAATTTGCGATTTCAGATGTGCGGTTAAGGAGGATTTAAAACGTCATTTTAGGAcgcataccggggaaaaaccgtttacgTGCGAGACGTGCGGCTATAAATGCTCggataagggaaatttaaaaaagcatttagTAACTCACACCGTCGAGAAGCCATTTTCGTGTGAATTGTGCATTTTCACCACTGCACATAGAGAAAGTTTGAAAAGTCATGTGAAAACCCACACAGGCGAAAAACCATTCGCATGTGATATCTGTTCATTTAAATTTGCCGTTAAGCAAGATCTAAAGAGGCATTTAAGAATtcacaccggggaaaaaccgtatgcatgtgaaatttgtgacttcAAATGTGCGCAAAGAGGATACTTAAAAACGCATATGGcaattcataccggcgaaaagccgtttTCATGTGAATTTTGCGCCTTCACGACTGCGCAGAgggaaaacttgaaaattcacatcagaattcataccggcgagaagccGTTTGGTTGTGAATTTTGCGAATACAAATGTGGAAGGAAGGAAGACTTAAATAGGCActtaagaactcatactggtAGTAAACCGTATGCCTGTAagatttgcgattttaaatgttcgttggcgggaaatttgaaaaaccatATGAAAATTCATACTGGTGACAAACCGCATGcgtgtgaaatttgtgaatCAAAATATGCTGATAAAGCAGGTTTAAAGAGACATTTAAGAACCCATacaggggaaaaaccgtttcTTTGCGATATATGTAGTTTTAAATCATCAGATGAAAGGAATTTAAAAACTCATTTGATGACTCATACAGGTGAGAAACCGTTTTCTTGTGAATTTTGTGCTTTTACCACTGCGCATAGAGCAAGCTTAAGATCCCATATAaggactcatactggcgagaaaccgttcgaGTGTGAATTTTGTGAATATAAATGTGCAAGGAAGGAAGATTTAAACAGGCATGTAAGGACTCATACCGGTAGCAAACCGTTCACATGTGATTTTTGCAACTTTACCTGTGCAGAAAGAGGAAATTTACGGCGGCATTTAAGAATTCATACTGGAGACAAGCCGTATTCGTGTGAATTTTGTGGCTCAAAATTTGGAGATAACAGGAATTTTAAAAGGCATTTAAGGACTCATGCTGCTTAG
Protein Sequence: MVKCWLQESLCDSKSYLHVKTEEVELKTEDLHHSIDIKEDTSFLHLTGFPPDRECKLQIIRKPFSCETCGHISKTKSDFSRHARTHTGEKPFPCEMCDYQCSNKGNLKKHLITHTSEKPFSCKICDFTTAHKESLKMHLRTHTGEKPYMCEICDFAFPATGSLNRHLKTHTGGKPFMCDICDFQSGSQADLKRHVRTHTGDKPYICEICDFKSSERGNLRRHLRIHTGDKPYPCEICGFKFSDQGNLKRHLKTHTGEKPFNCEICDFRCAVKEDLKRHFRTHTGEKPFTCETCGYKCSDKGNLKKHLVTHTVEKPFSCELCIFTTAHRESLKSHVKTHTGEKPFACDICSFKFAVKQDLKRHLRIHTGEKPYACEICDFKCAQRGYLKTHMAIHTGEKPFSCEFCAFTTAQRENLKIHIRIHTGEKPFGCEFCEYKCGRKEDLNRHLRTHTGSKPYACKICDFKCSLAGNLKNHMKIHTGDKPHACEICESKYADKAGLKRHLRTHTGEKPFLCDICSFKSSDERNLKTHLMTHTGEKPFSCEFCAFTTAHRASLRSHIRTHTGEKPFECEFCEYKCARKEDLNRHVRTHTGSKPFTCDFCNFTCAERGNLRRHLRIHTGDKPYSCEFCGSKFGDNRNFKRHLRTHAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00272102;
90% Identity: iTF_00272102;
80% Identity: iTF_00272102;