Basic Information

Insect: Cantharis lateralis
Gene Symbol: -
Assembly: GCA_963170105.1
Location: OY720628.1:37469074-37471604[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 2.9 4.1e+03 -1.2 0.0 23 46 53 76 48 83 0.78

2 21 0.26 3.7e+02 2.1 0.0 21 46 79 104 72 111 0.83

3 21 0.26 3.7e+02 2.1 0.0 21 46 107 132 103 140 0.82

4 21 0.12 1.7e+02 3.2 0.0 21 45 135 159 127 168 0.86

5 21 1 1.5e+03 0.2 0.0 23 52 165 194 160 196 0.76

6 21 0.0035 5 8.1 0.1 22 50 192 220 183 222 0.83

7 21 0.042 60 4.6 0.0 22 46 220 244 217 250 0.85

8 21 0.26 3.7e+02 2.1 0.0 21 45 247 271 243 279 0.81

9 21 0.8 1.1e+03 0.6 0.0 21 45 275 299 267 308 0.82

10 21 1 1.5e+03 0.2 0.0 21 44 303 326 300 330 0.82

11 21 0.027 39 5.2 0.0 21 47 331 357 326 364 0.82

12 21 0.8 1.1e+03 0.6 0.0 21 48 359 386 355 390 0.84

13 21 0.0026 3.6 8.5 0.1 21 49 387 415 379 418 0.88

14 21 0.18 2.5e+02 2.6 0.1 21 52 415 446 411 448 0.78

15 21 0.26 3.6e+02 2.1 0.1 23 52 445 474 439 476 0.84

16 21 0.047 66 4.5 0.0 22 45 472 495 459 498 0.89

17 21 0.0067 9.5 7.2 0.0 21 52 499 530 495 532 0.91

18 21 0.61 8.6e+02 0.9 0.0 23 46 529 552 526 558 0.79

19 21 0.091 1.3e+02 3.6 0.3 21 51 555 585 544 586 0.78

20 21 0.0001 0.14 13.0 0.1 22 52 584 614 578 615 0.83

21 21 0.071 1e+02 3.9 0.0 22 45 612 635 608 638 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	2.9	4.1e+03	-1.2	0.0	23	46	53	76	48	83	0.78
2	21	0.26	3.7e+02	2.1	0.0	21	46	79	104	72	111	0.83
3	21	0.26	3.7e+02	2.1	0.0	21	46	107	132	103	140	0.82
4	21	0.12	1.7e+02	3.2	0.0	21	45	135	159	127	168	0.86
5	21	1	1.5e+03	0.2	0.0	23	52	165	194	160	196	0.76
6	21	0.0035	5	8.1	0.1	22	50	192	220	183	222	0.83
7	21	0.042	60	4.6	0.0	22	46	220	244	217	250	0.85
8	21	0.26	3.7e+02	2.1	0.0	21	45	247	271	243	279	0.81
9	21	0.8	1.1e+03	0.6	0.0	21	45	275	299	267	308	0.82
10	21	1	1.5e+03	0.2	0.0	21	44	303	326	300	330	0.82
11	21	0.027	39	5.2	0.0	21	47	331	357	326	364	0.82
12	21	0.8	1.1e+03	0.6	0.0	21	48	359	386	355	390	0.84
13	21	0.0026	3.6	8.5	0.1	21	49	387	415	379	418	0.88
14	21	0.18	2.5e+02	2.6	0.1	21	52	415	446	411	448	0.78
15	21	0.26	3.6e+02	2.1	0.1	23	52	445	474	439	476	0.84
16	21	0.047	66	4.5	0.0	22	45	472	495	459	498	0.89
17	21	0.0067	9.5	7.2	0.0	21	52	499	530	495	532	0.91
18	21	0.61	8.6e+02	0.9	0.0	23	46	529	552	526	558	0.79
19	21	0.091	1.3e+02	3.6	0.3	21	51	555	585	544	586	0.78
20	21	0.0001	0.14	13.0	0.1	22	52	584	614	578	615	0.83
21	21	0.071	1e+02	3.9	0.0	22	45	612	635	608	638	0.89

Sequence Information

Coding Sequence: ATGGAATCTCCATTGGATTCAAAGAGCTTCTCTCAAATTAAGACGGAAGAAGTGGAACTGAAGTTGGAAGAACTGCACCATTCCATTGAGATTAAAGAAGAGACTTCGTTTTTGGGATTCCAATCGGAGAGAGAATGCAAACCCCAAATAGACCGGAAACCGTTTTCGTGTGAAACGTGCGGCTACATCTCGAAAACGAAAAGCGATTTTAACAGGcatttaagaactcatacAGGGGAAAAACCGTTTCCGTGCGACATGTGCGATTATCACTGCTCGAATAagggaaatttaaagaaacacTTAATAACTCATACTAGCGATAAGCCGTTttcgtgtaaaatttgtgaCTTTACAACTGCACACAAGGAAAgcttaaaaatgcatttaagaactcatacGGGTGAGAAACCATATatgtgtgaaatttgtgattttgcTTTTCCAACTACGGGATCTTTAAACAGGCACTTAAAAACCCACACTGGCCGGAGGCCGTTCATGTGCGACATTTGTGAATTCCAAAGTGCAAGTCAAGCAGATTTAAAACGGCATGTGAGAACTCACACTGGCGATAAGCCATACGTATGCGAAATTTGTGACTTTAAATCCTCGGAGAGAGGAAATTTAAGAAGGCATTTGAGAATTCACACTGGGGACAAGCCGTTTccgtgtgaaatttgtggatttaaattttccgatcaaggaaatttgaaaagacATTTAAAGTCTCATACCGgggaaaaaccatttaattgCGAAATTTGCGATTTCAAATGTGCGGTTAAGGAGGATTTAAAAAGACATTTTAGAACCCACACCGGGGAGAAACCGTTTGGGTGCGAAACTTGCGGTTATAGATGTGCAGATAAAGGAAATCTAAAAAAGCATCTGATTACTCACACCGACGAGAAACCATTTTCGTGTGAGTTGTGCTTTTTCACCACCGCACACAAAGAGAGCTTGAAAAGTCATGTGAAAACTCAcaccggggaaaaaccgtacGGGTGTGATATCTGTGCATTTAAATTTGCGGTTAAGCAGGATCTCAAAAGGCATTTACGAACTCACACAGGGGAAAAACCTTACGCTTGTGAATTTTGTGACTTTAAATGTGCGCAGAGGGGGTATTTAAAAACTCACTTGGCAATCCATACCGGTGAAAAACCGTTTTCTTGCGAAATTTGCTCCTTCACGACTGCGcaaagagaaaatttaaaaattcacctcAGAATTCAtaccggggaaaaaccgtttggTTGTGAGATGTGTGAATACAAATGTGCAAGGAAAGAAGACTTAAATAGGCATTTAAGGACACATACCGGCAGTAAGCcatttgaatgtaaaatttgcgacTTCCGATGTTCATTGGcgggaaatttaaagaatcaCTTGAGAATTCATACTGGTGACAAACCACACgcatgtaaaatttgcgattcCAAATTTGCCGATAAAGCCAGTTTAAAAAGAcatttaagaactcatacAGGGGAAAAACCCTTTTCTTGCGAGATGTGTAGCTTTAAATCTTCAGATGaaaggaatttaaaaacacaCCTGATGACTCATACTGGCGCCAAGCCCTTTTCATGTGAAATTTGTGCGTTTGCCACTGCACATAGAGGAAGCTTAAGATCTCATTTAAGGACGCATACAGGCGAGAAACCTTTCGAGTGCGAAGTTTGTCAGTACAAATGTGCAAGGAAGGAAGATTTAAATAGGCACTTAAGAACTCATAGCGGTAGTAAACCGTTCACGTGTGATATTTGTAACTTTAAATGTGCTGAAGGGGGAAATTTAAGACGGCATTTAAGAATACATACCGGTGATAAACCGTATTCGTGTGAATTTTgtggtttaaaatttggagACAAACGCAATTTTAAAAGGCATTTAAAGACTCATTCTGGTTGA
Protein Sequence: MESPLDSKSFSQIKTEEVELKLEELHHSIEIKEETSFLGFQSERECKPQIDRKPFSCETCGYISKTKSDFNRHLRTHTGEKPFPCDMCDYHCSNKGNLKKHLITHTSDKPFSCKICDFTTAHKESLKMHLRTHTGEKPYMCEICDFAFPTTGSLNRHLKTHTGRRPFMCDICEFQSASQADLKRHVRTHTGDKPYVCEICDFKSSERGNLRRHLRIHTGDKPFPCEICGFKFSDQGNLKRHLKSHTGEKPFNCEICDFKCAVKEDLKRHFRTHTGEKPFGCETCGYRCADKGNLKKHLITHTDEKPFSCELCFFTTAHKESLKSHVKTHTGEKPYGCDICAFKFAVKQDLKRHLRTHTGEKPYACEFCDFKCAQRGYLKTHLAIHTGEKPFSCEICSFTTAQRENLKIHLRIHTGEKPFGCEMCEYKCARKEDLNRHLRTHTGSKPFECKICDFRCSLAGNLKNHLRIHTGDKPHACKICDSKFADKASLKRHLRTHTGEKPFSCEMCSFKSSDERNLKTHLMTHTGAKPFSCEICAFATAHRGSLRSHLRTHTGEKPFECEVCQYKCARKEDLNRHLRTHSGSKPFTCDICNFKCAEGGNLRRHLRIHTGDKPYSCEFCGLKFGDKRNFKRHLKTHSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00272102;
90% Identity: iTF_00270111;
80% Identity: iTF_00270111;