Clat022678.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720628.1:37469074-37471604[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1e-05 0.00052 21.1 2.0 1 23 55 77 55 77 0.98 2 21 3.6e-05 0.0018 19.3 4.0 1 23 83 105 83 105 0.98 3 21 7.5e-05 0.0039 18.3 3.1 1 23 111 133 111 133 0.98 4 21 5e-06 0.00026 22.0 0.3 1 23 139 161 139 161 0.98 5 21 0.00026 0.013 16.6 0.3 1 23 167 189 167 189 0.98 6 21 2.9e-05 0.0015 19.6 0.4 1 23 195 217 195 217 0.98 7 21 1.4e-07 7.4e-06 26.9 0.6 1 23 223 245 223 245 0.98 8 21 0.00059 0.031 15.5 2.9 1 23 251 273 251 273 0.98 9 21 7.2e-05 0.0037 18.4 1.4 3 23 281 301 279 301 0.98 10 21 0.0088 0.46 11.8 3.4 1 23 307 329 307 329 0.98 11 21 0.00038 0.02 16.1 0.4 3 23 337 357 335 357 0.98 12 21 0.0042 0.22 12.8 1.3 1 23 363 385 363 385 0.97 13 21 7.3e-05 0.0038 18.4 0.4 1 23 391 413 391 413 0.98 14 21 0.00016 0.0081 17.3 2.2 3 23 421 441 419 441 0.98 15 21 6.3e-05 0.0033 18.6 1.5 1 23 447 469 447 469 0.98 16 21 6.9e-06 0.00036 21.6 1.8 1 23 475 497 475 497 0.97 17 21 0.0012 0.065 14.5 1.5 1 23 503 525 503 525 0.98 18 21 0.0011 0.06 14.6 0.9 1 23 531 553 531 553 0.98 19 21 1.2e-05 0.00062 20.8 2.5 1 23 559 581 559 581 0.99 20 21 0.00073 0.038 15.2 1.2 1 23 587 609 587 609 0.98 21 21 1.5e-05 0.00076 20.6 2.6 1 23 615 637 615 637 0.99
Sequence Information
- Coding Sequence
- ATGGAATCTCCATTGGATTCAAAGAGCTTCTCTCAAATTAAGACGGAAGAAGTGGAACTGAAGTTGGAAGAACTGCACCATTCCATTGAGATTAAAGAAGAGACTTCGTTTTTGGGATTCCAATCGGAGAGAGAATGCAAACCCCAAATAGACCGGAAACCGTTTTCGTGTGAAACGTGCGGCTACATCTCGAAAACGAAAAGCGATTTTAACAGGcatttaagaactcatacAGGGGAAAAACCGTTTCCGTGCGACATGTGCGATTATCACTGCTCGAATAagggaaatttaaagaaacacTTAATAACTCATACTAGCGATAAGCCGTTttcgtgtaaaatttgtgaCTTTACAACTGCACACAAGGAAAgcttaaaaatgcatttaagaactcatacGGGTGAGAAACCATATatgtgtgaaatttgtgattttgcTTTTCCAACTACGGGATCTTTAAACAGGCACTTAAAAACCCACACTGGCCGGAGGCCGTTCATGTGCGACATTTGTGAATTCCAAAGTGCAAGTCAAGCAGATTTAAAACGGCATGTGAGAACTCACACTGGCGATAAGCCATACGTATGCGAAATTTGTGACTTTAAATCCTCGGAGAGAGGAAATTTAAGAAGGCATTTGAGAATTCACACTGGGGACAAGCCGTTTccgtgtgaaatttgtggatttaaattttccgatcaaggaaatttgaaaagacATTTAAAGTCTCATACCGgggaaaaaccatttaattgCGAAATTTGCGATTTCAAATGTGCGGTTAAGGAGGATTTAAAAAGACATTTTAGAACCCACACCGGGGAGAAACCGTTTGGGTGCGAAACTTGCGGTTATAGATGTGCAGATAAAGGAAATCTAAAAAAGCATCTGATTACTCACACCGACGAGAAACCATTTTCGTGTGAGTTGTGCTTTTTCACCACCGCACACAAAGAGAGCTTGAAAAGTCATGTGAAAACTCAcaccggggaaaaaccgtacGGGTGTGATATCTGTGCATTTAAATTTGCGGTTAAGCAGGATCTCAAAAGGCATTTACGAACTCACACAGGGGAAAAACCTTACGCTTGTGAATTTTGTGACTTTAAATGTGCGCAGAGGGGGTATTTAAAAACTCACTTGGCAATCCATACCGGTGAAAAACCGTTTTCTTGCGAAATTTGCTCCTTCACGACTGCGcaaagagaaaatttaaaaattcacctcAGAATTCAtaccggggaaaaaccgtttggTTGTGAGATGTGTGAATACAAATGTGCAAGGAAAGAAGACTTAAATAGGCATTTAAGGACACATACCGGCAGTAAGCcatttgaatgtaaaatttgcgacTTCCGATGTTCATTGGcgggaaatttaaagaatcaCTTGAGAATTCATACTGGTGACAAACCACACgcatgtaaaatttgcgattcCAAATTTGCCGATAAAGCCAGTTTAAAAAGAcatttaagaactcatacAGGGGAAAAACCCTTTTCTTGCGAGATGTGTAGCTTTAAATCTTCAGATGaaaggaatttaaaaacacaCCTGATGACTCATACTGGCGCCAAGCCCTTTTCATGTGAAATTTGTGCGTTTGCCACTGCACATAGAGGAAGCTTAAGATCTCATTTAAGGACGCATACAGGCGAGAAACCTTTCGAGTGCGAAGTTTGTCAGTACAAATGTGCAAGGAAGGAAGATTTAAATAGGCACTTAAGAACTCATAGCGGTAGTAAACCGTTCACGTGTGATATTTGTAACTTTAAATGTGCTGAAGGGGGAAATTTAAGACGGCATTTAAGAATACATACCGGTGATAAACCGTATTCGTGTGAATTTTgtggtttaaaatttggagACAAACGCAATTTTAAAAGGCATTTAAAGACTCATTCTGGTTGA
- Protein Sequence
- MESPLDSKSFSQIKTEEVELKLEELHHSIEIKEETSFLGFQSERECKPQIDRKPFSCETCGYISKTKSDFNRHLRTHTGEKPFPCDMCDYHCSNKGNLKKHLITHTSDKPFSCKICDFTTAHKESLKMHLRTHTGEKPYMCEICDFAFPTTGSLNRHLKTHTGRRPFMCDICEFQSASQADLKRHVRTHTGDKPYVCEICDFKSSERGNLRRHLRIHTGDKPFPCEICGFKFSDQGNLKRHLKSHTGEKPFNCEICDFKCAVKEDLKRHFRTHTGEKPFGCETCGYRCADKGNLKKHLITHTDEKPFSCELCFFTTAHKESLKSHVKTHTGEKPYGCDICAFKFAVKQDLKRHLRTHTGEKPYACEFCDFKCAQRGYLKTHLAIHTGEKPFSCEICSFTTAQRENLKIHLRIHTGEKPFGCEMCEYKCARKEDLNRHLRTHTGSKPFECKICDFRCSLAGNLKNHLRIHTGDKPHACKICDSKFADKASLKRHLRTHTGEKPFSCEMCSFKSSDERNLKTHLMTHTGAKPFSCEICAFATAHRGSLRSHLRTHTGEKPFECEVCQYKCARKEDLNRHLRTHSGSKPFTCDICNFKCAEGGNLRRHLRIHTGDKPYSCEFCGLKFGDKRNFKRHLKTHSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00272102;
- 90% Identity
- iTF_00270690;
- 80% Identity
- iTF_00270690;