Cbil000568.1
Basic Information
- Insect
- Camptogramma bilineatum
- Gene Symbol
- -
- Assembly
- GCA_958496255.1
- Location
- OY292450.1:5080314-5085074[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00058 2.8 8.8 0.2 21 48 247 274 242 276 0.90 2 11 0.00044 2.1 9.2 0.1 20 45 275 300 271 305 0.87 3 11 0.012 58 4.6 0.1 21 50 342 371 338 376 0.90 4 11 0.003 14 6.5 0.1 21 48 464 491 462 497 0.91 5 11 0.34 1.6e+03 -0.1 0.0 26 48 498 520 492 523 0.88 6 11 0.0044 21 6.0 0.0 21 48 562 589 559 593 0.88 7 11 0.12 5.7e+02 1.4 0.0 23 46 605 628 600 634 0.85 8 11 0.5 2.4e+03 -0.6 0.0 24 51 691 718 687 719 0.80 9 11 0.00042 2 9.3 0.0 21 46 716 741 711 747 0.91 10 11 0.25 1.2e+03 0.4 0.1 21 45 772 796 765 801 0.85 11 11 0.0097 46 4.9 0.2 21 45 801 825 797 833 0.88
Sequence Information
- Coding Sequence
- ATGTATGATATCGGTAGCACTCGGTATCAAGAGATGCTTGAGAAACTGACGGGCGAAACGATAACTGCAGGAGAAGATGTGCCGAACACTCTGTGCTACCTCTGTCACTCGCAAGTGCAGAAGGTGTGGAGGTTCCTCGTCTCCTGTCAGAGCATGGAGAGGAACCTGGCGAGACTGCTGCAGTACGGAGTCAAGGTATCCAGCTTGTCAGTGACTCTGATAAATAAAGCGAGTGTTCACAATCTGATGCTGTCTTCCGTCAAACAAACCTTCGACTGTGTGGTGTTCTGTGTGAAGGAAGAAGATGTGGCGGTCAAAACAGAGGCTTTGGACAAACGAGACCGTCTCGATGAGGATGTTGAAGACCTACCTACAGTGTCTGAAGACAATGATTCAGAATCGGACCCCTTAGAAGCTGTCAAAATCGAAGATATCGATGAAAGTCTATCTATCCCTTACCAATGTGACGATTGTCCGAGAAGATTCAACTCAGCTAAAGATCTTGAAAGGCATAAAATCACTCATAAAAAGATACACAAAATTAACACCGATTCAGAATTGATAAATAATGATGAAGAGTATTTGGGTGATGAAAAGTCTGTAGAAGAGTTAGAGAATGAGAAATGTGACGCGGAGAGTCTGATAGCGTCCGATGGAGTGAAATTTGCGTGTGTATTGTGTAATAAGACATTCTCACAGAAAGGCCATTTGAAAACGCACATAATGGCCTTACATACTGGCGAAAGGCCATTTGCATGCACTATATGTAATAAAAGATTCGTGCAAAAGAGTAATTTGCGAACTCATGTAAAATCAGCACACACAGATGAGTTACCCCACACTTGTAATATATGTAAAGGAGTTTGTAATGATGAAAGCCATTTGAGAGAGCATATGGGTATACATACTAACACATTTATCGAGGTAATTGAGTCTGGAGCTAAACCGTTTGCGTGTGGACAGTGTGGGAAAGCATTTACAGCGAAAGCCCATCTGAAATCGCATATAATGGCCATTCATACAGGTGAAAGGCCATTTGCATGTACTATGTGCGATAAAAGATACACACAAAAAAGCCATTTAAGACTACACGCCCGTCTTTCTCATGTTGTAGAGAAACCATTTGGTTGCGATGATTGTGAAATGAGATTCGACGACGCAGAATCATTGAGAAAGCATGGAAGAGCTCATGAAAAATCAACATTCATCTGCTCGACTTGCCACAAACTTTTTTTAACCGAAAACAGTTTCAATAAACATATTCTCGGTCATAGCGAGAAACGCAGTGTTAAAgtcaaagttaaagttaaaccaTTCTCGTGTGTGTTGTGCGGCAAGAAGTTCGGTTGGAAATCACATTTAAAAACCCATATAATGGCCATACATACCGGCGAAAGGCCATATTCATGTTCTTTATGTGATAAAACATTCGTTCAGCGTAGTAACTTAAGGTCGCATTCTAAAGTAGCTCATTCTATATCAAGCTCATTGAAATGTGATGTCTGCAAGAAAACTTTTCGAACCGAATACAATCTTAATATACACATGAAGAGTGTTCATTTGAATGAAGAGACAAAGAACGAGAAAGATGTTGATATTAAGAGGCCGTTCGCGTGTCTTATGTGTAGTAAAAGATTTGGGTGGAAATCACATCTTAAAACCCACATAATGGCCATACATACCGACGAAAGACCGTACGCGTGCCCTATGTGTGACAAAAAGTTCGTACAAAAGAGCTATTTAAGATACCACATGAAAAATGTCCATCCGGGAGAAAAAGCTACACAAACCATGACTAATATAGGACACGGACGGCCTTTTACATGTAAAATATGCTCCATTAAGTTCACAAACAAAACCAACTTTGAAAAACATAAGAGATTGCATACAGACACTCCTCCATACTTATGTATCAAATGCGATCAGAAATTCACCTCCAAAGATGATATGGACTCACATAATTTATGCTTGCATGCATTAGACCTAACGTTCGTCTGTGCTACATGTAATTCTAGATTTGAGGATGAGAAAGGCTTGAAGAAACATCATCTTGTACATTCTGTCAGCTACCCTCTATTCTGTGAAGTTTGCAATCGAACATATCCATCAAAATCCTCGTTAAAACGACACCAAGAAATCCACAGCGACGAGAAACCATATTCCTGTAAATTTTGCAAGAAAGCTTTTAAACAAGAGCGTGTATTgaaaaaacatttacaaattCATACGGAGGAGAAGAAATTCGGATGTGATACTTGCGGAAGGAAGTTTTATCAACGAGGTAACTTAATAGGTCACATGCGGATACATTCTGGTGAAAAACCATATGTATGTGATCGATGTGGTAACAGTTTCAACCAGAAAAGTCATTTAAGAACgcataatttatttatgcaTACAACGGACAAGCCTCATACTTGTAACGTATGTAATAAGAAGTTTAGACTTAAGAGTTGTCTGCGGAACCATATGATGGTTCACACGGGGGAACGGCCTCATCCATGCGATAGATGTGACAAGAAGTATTATAAGAAAAGCGAGTTGAAATCGCACGTTTTGAAAATGCACTCTTAA
- Protein Sequence
- MYDIGSTRYQEMLEKLTGETITAGEDVPNTLCYLCHSQVQKVWRFLVSCQSMERNLARLLQYGVKVSSLSVTLINKASVHNLMLSSVKQTFDCVVFCVKEEDVAVKTEALDKRDRLDEDVEDLPTVSEDNDSESDPLEAVKIEDIDESLSIPYQCDDCPRRFNSAKDLERHKITHKKIHKINTDSELINNDEEYLGDEKSVEELENEKCDAESLIASDGVKFACVLCNKTFSQKGHLKTHIMALHTGERPFACTICNKRFVQKSNLRTHVKSAHTDELPHTCNICKGVCNDESHLREHMGIHTNTFIEVIESGAKPFACGQCGKAFTAKAHLKSHIMAIHTGERPFACTMCDKRYTQKSHLRLHARLSHVVEKPFGCDDCEMRFDDAESLRKHGRAHEKSTFICSTCHKLFLTENSFNKHILGHSEKRSVKVKVKVKPFSCVLCGKKFGWKSHLKTHIMAIHTGERPYSCSLCDKTFVQRSNLRSHSKVAHSISSSLKCDVCKKTFRTEYNLNIHMKSVHLNEETKNEKDVDIKRPFACLMCSKRFGWKSHLKTHIMAIHTDERPYACPMCDKKFVQKSYLRYHMKNVHPGEKATQTMTNIGHGRPFTCKICSIKFTNKTNFEKHKRLHTDTPPYLCIKCDQKFTSKDDMDSHNLCLHALDLTFVCATCNSRFEDEKGLKKHHLVHSVSYPLFCEVCNRTYPSKSSLKRHQEIHSDEKPYSCKFCKKAFKQERVLKKHLQIHTEEKKFGCDTCGRKFYQRGNLIGHMRIHSGEKPYVCDRCGNSFNQKSHLRTHNLFMHTTDKPHTCNVCNKKFRLKSCLRNHMMVHTGERPHPCDRCDKKYYKKSELKSHVLKMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00267787; iTF_00267388; iTF_00267389;
- 90% Identity
- iTF_00267787; iTF_00267388; iTF_00267389;
- 80% Identity
- iTF_00267389;