Cvic021578.2
Basic Information
- Insect
- Calliphora vicina
- Gene Symbol
- lrrfip2
- Assembly
- GCA_958450345.1
- Location
- OY288235.1:18641020-18652120[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2 3.6e+04 -12.7 21.8 67 211 13 154 2 169 0.61 2 4 2 3.6e+04 -5.7 7.7 22 68 190 230 169 276 0.41 3 4 7.5e-117 1.3e-112 376.9 26.6 1 299 303 599 303 600 0.93 4 4 0.11 1.9e+03 -1.2 3.7 220 245 628 653 603 674 0.47
Sequence Information
- Coding Sequence
- ATGGATACTACAAGTGCCGTAGGACGGCGTCGTGTAAATTCGCGTGTCAATGCCGAGGATCAAGCTTTGGATCAAATAGCAAAAGagGAGTTGTTTGATTTTAGCGATACAGATTTAAAAGAACTCGACGATACAGAAACTAAAGAAGAAATTAGcgaaaataacaacaacgaaAACGTAAACTCTACTACCAGTATCGAGCTGTTAAATAAAGATATTGAAGAATTAAAGGAAGAAGATGAAGTTGACAAAAAGTCAGAGGTGCAATTGCAAGCTATAGAAAatgataataacaacaataataatcataataacgAAGTGAAAGACGAAGAaaggcaacaacaacaacaggtGGGAGACTCATTATCGTCGAGTATTGATAACATTGATAAACAAAACGAAGAAGAACAACAAGAAGACAATGAATTAGCCTCGACAATAATAACATTACCAACAGCGGCTACGTCTGCGGCGACTGCAAATATTATTAGCGAAGAAGgaaataaagataataataaaattgataaaaaacaacaacaacaccaaccaGAGTCTTTCCAAGAAGAAGAACAAGAGAACGAAGAAAAAGAACCCAATGAGAATACATTGTTAAATAAAGACACCACTAGCAGCACTCCCGTGCAAATCACCAATAGTTCTATTGTTGACGAACTGCCACTGACTACGTCTGACAACAATGACAACAAAATGTCAACCTCTTCAGACACAAAGTCTAAGCAAACAACTGACGATACTCCAGAGTCGTCTTTGGTTGCAAATAAAGAAAGCAGTTACAATGAGCATGATGATAACAATGATTTAAATGACGATGGCGTTGATGATGATGAGTATGCCGAACCGTATGATGAACTACTAGTGCAATTCCTTGATGAAGCCAACCAGATTGCTGAGGCTAGATTAGCAGCCAGAAGGCATGCCCGAGCAGAAGCTCGAGAGATACGTATGCGAGAATTGGAACGGCAGCAAAAAGAACAAGAATCTAATGCAGATCGGGTATTCGATATGCACTCAACCGTTACAGGCATAACACCACTGTCACACATGCGTCTGGGTTTGGGCAGTTCGCCGGTAACTGGCTTACTAAACTCTACGCGAGGCAATTCAATGTCGTCGAGACGTAGTAGTGAAGATTCACTGGAAGAGGAAGGCCGCAGTTTAAGAGATATACGTCATGAGTTAAAGGATGTTGAAGAACGATTTCGTAAGGCTATGATAGCGAACGCTCAGTTGGATAATGATCGTGCCTCACAAACCTATCAGATACAGTTGCTTAAAGATAAACTGGAAGATATGGAAGAATCGTATTCACAATTACAGCGTGAGTGTAAGGAAAAGACACGCGATTGTAATGCCTTGAAGCGATCGTTGGACAAACTGAGTGAAGAGCTTAAACTGGTACAGGGTCAGCTGAATGAGCGTGACACACTGATAGCAGAACAAGGCTTAGTTATTGTGGCAATTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCAGCGTTGAAAATGCACAATTATTGGGTTCGGTACAAGGATCATTAGATGTTCGACTTAAGAAATTTAGCGAGGAGAAACAACAACTGCAGGCCGAAGTCCAGCAGTTGCAGGAGCAATTAGAAACCTATAAAAGTCAGGGCAAAGGTCGAGGTAAAGGCAATTCTTCAAATGGTCCCTTAGGTTCAGACGATGATGATTATGAAGCTCAAAGAGAAGCTAATAAAATCATATCGgattacaaatataaattacaaaaagctGAACAGGAAATTGCTAGTCTACAATCGAGTTTGGCACGTTCCGAAACACAAGTTATACGCTATAAAAGTACAGCAGAGGCGGCCGAAAAGGCAGAGGCAGAACTTAAAATCGAAAGGAGGAAACTACAAAGAGAGAATCGCGAAACAATGGAAAAACTCGAAGAGTTAGAAACATCAAATAATCATCTTCTTAAACGTCTGGACAAATTAAAGAATGCCAAAAGTGCTTTGCTCAAAGATCTCTGA
- Protein Sequence
- MDTTSAVGRRRVNSRVNAEDQALDQIAKEELFDFSDTDLKELDDTETKEEISENNNNENVNSTTSIELLNKDIEELKEEDEVDKKSEVQLQAIENDNNNNNNHNNEVKDEERQQQQQVGDSLSSSIDNIDKQNEEEQQEDNELASTIITLPTAATSAATANIISEEGNKDNNKIDKKQQQHQPESFQEEEQENEEKEPNENTLLNKDTTSSTPVQITNSSIVDELPLTTSDNNDNKMSTSSDTKSKQTTDDTPESSLVANKESSYNEHDDNNDLNDDGVDDDEYAEPYDELLVQFLDEANQIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSTVTGITPLSHMRLGLGSSPVTGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLNERDTLIAEQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVQQLQEQLETYKSQGKGRGKGNSSNGPLGSDDDDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENRETMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199874;
- 90% Identity
- iTF_00045344; iTF_00259764;
- 80% Identity
- -