Cvom011633.1
Basic Information
- Insect
- Calliphora vomitoria
- Gene Symbol
- lrrfip2
- Assembly
- GCA_942486075.2
- Location
- CALNXM020000306.1:1039670-1053733[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1 2.1e+04 -12.6 30.1 31 169 33 176 21 214 0.62 2 4 1 2.1e+04 -5.7 7.2 25 80 251 301 229 335 0.43 3 4 1.1e-115 2.3e-111 372.1 25.6 1 299 361 657 361 658 0.93 4 4 0.11 2.2e+03 -2.2 4.3 220 244 686 710 662 732 0.46
Sequence Information
- Coding Sequence
- ATGTCAGTGGAACAAAAATTAACTGATAAAAATGTTGTGACTACAGCAACAACCGCAAATTCGAGTTTAACAAAAACTAATAAAAAGAACAATAACAACAACAATAGTAGTAAGAAATTCATTAAAAAAGCATTGAAAACATCAAAAACTAAAAAAACTACAAACACTTCTAATGTCAACAACAACAGCAGCAAAAAAACGAATAACAAACACAGCAACAACAGCACTAGTAGCAGCAACAACAATGTTGAAGTGGCAAACGATGAAATCATCGAGGAGTTGTTTGATTTTAGCGATACAGATTTAAAAGAACTCGACGATACAGAAACTAAAGAAGAAATTAGCGAAAATAACAACGAAAACGAAAACTCTACTACCAGTATCGAGCTGTTAAATAAAGATATTGAAGAATTAAAGGAAGCAGATGAAGTTGACAAAAAGTCAGAGGTGCAATTGCAAAATATAGAAAATGATAATAACAACAATAATAATCATAATAACGAAGTGAAAGACGAAGAAATACAACAACAACAGGTGGGAGAATCATTATCGTCGCCTATTGATAACATTGATAAACAAAACGAAGAAGAACAACAAGAAGACAATGAATTAGCCACGACAATAACACTACCAACAGCGGCTACGACTGCGGTGACTGAAAATATTATTAGCGAAGAAGAAGGAAATAAAGATAATAACAAAATTGATAAAAAACAACAACACCAACCAGAGTCTTTCCAAGAAGAAAAACAAGAGAACAAAGAAAAAGAACCCAATGAGAATACATTGTTAAATAAAGACACTAGCAGCACTCCCGTGGAAATCACCAATAGTTCTATTGTTGACGAACTGCCACTGACTTCGTCTGACAACAATGACAACAAAATGTCAACATCTTCAGACACAAAGTCTAAGCAAACAACTGACGATACTCCAGAGTCGTCTTTGGTTGCAAATAAAGAAAGTAGTTACAATGAGCATGATGATAACAATGATTTAAATGACGATGTCGTTGATGATGAGTATGCCGAACCGTATGATGAACTACTAGTGCAATTCCTTGATGAAGCCAACCAGATTGCTGAGGCTAGATTAGCAGCCAGAAGGCATGCCCGAGCGGAAGCTCGAGAGATACGTATGCGAGAATTGGAACGGCAGCAAAAAGAACAAGAATCTAATGCAGATCGTGTGTTCGATATGCACTCAACCGTTACAGGCATAACACCACTGTCACACATGCGTCTGGGTTTGGGTAGTTCGCCAGTTACTGGTTTACTAAACTCTACGCGAGGCAATTCAATGTCGTCTAGACGTAGTAGTGAAGATTCACTGGAAGAGGAGGGCCGCAGTTTAAGAGATATACGTCATGAGTTAAAGGATGTTGAAGAACGATTTCGTAAGGCTATGATAGCAAATGCTCAGTTGGATAATGATCGTGCCTCACAAACCTATCAGATACAGTTGCTTAAAGACAAACTGGAAGATATGGAAGAATCATATTCACAATTACAGCGTGAGTGTAAGGAAAAGACACGCGATTGTAATGCCTTGAAGCGATCGTTGGACAAACTGAGTGAAGAGCTTAAACTGGTACAGGGTCAGCTAAATGAGCGTGACACACTGATAGCAGAACAAGGCTTAGTTATTGTGGCAATTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCAGCGTTGAAAATGCACAATTATTGGGTTCGGTACAAGGATCATTAGATGTTCGACTTAAGAAATTTAGCGAGGAGAAACAACAACTGCAGGCCGAAGTCCAGCAGTTGCAGGAACAATTAGAAACCTATAAAAGTCAGGGCAAAGGTCGAGGTAAAGGCAATTCTTCAAATGGTCCCTTAGGTTCAGACGATGATGATTATGAAGCTCAAAGAGAAGCTAATAAAATCATATCAGATTACAAATTTAAATTACAAAAAGCTGAACTGGAAATTGCTAGTCTACTATCGAGTTTGCAACGTTCCGAGTCACAAGTTATACGCTATAAAAGTACAGCAGAGGCGGCCGAAAAAGCTGAGGCAGAACTTAAAATCGAAAGGAGGAAACTACAAAGAGAGAATCGCGAAACAATGGAAAAACTCGAAGAGTTAGAAACATCAAATAATCATCTTCTTAGACGGCTGGACAAATTAAAGAATGCCAAAAGTGCTTTGCTCAAAGAACTCTGA
- Protein Sequence
- MSVEQKLTDKNVVTTATTANSSLTKTNKKNNNNNNSSKKFIKKALKTSKTKKTTNTSNVNNNSSKKTNNKHSNNSTSSSNNNVEVANDEIIEELFDFSDTDLKELDDTETKEEISENNNENENSTTSIELLNKDIEELKEADEVDKKSEVQLQNIENDNNNNNNHNNEVKDEEIQQQQVGESLSSPIDNIDKQNEEEQQEDNELATTITLPTAATTAVTENIISEEEGNKDNNKIDKKQQHQPESFQEEKQENKEKEPNENTLLNKDTSSTPVEITNSSIVDELPLTSSDNNDNKMSTSSDTKSKQTTDDTPESSLVANKESSYNEHDDNNDLNDDVVDDEYAEPYDELLVQFLDEANQIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSTVTGITPLSHMRLGLGSSPVTGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLNERDTLIAEQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVQQLQEQLETYKSQGKGRGKGNSSNGPLGSDDDDYEAQREANKIISDYKFKLQKAELEIASLLSSLQRSESQVIRYKSTAEAAEKAEAELKIERRKLQRENRETMEKLEELETSNNHLLRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199874;
- 90% Identity
- iTF_00258875;
- 80% Identity
- -