Cpal004078.1
Basic Information
- Insect
- Calameuta pallipes
- Gene Symbol
- clz9
- Assembly
- GCA_030142375.1
- Location
- JARQSW010000366.1:989152-991179[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-08 2.9e-05 23.9 0.0 1 40 29 67 29 69 0.94
Sequence Information
- Coding Sequence
- atggGGACTAAAGAAACTGCAGACTCATTTATTATTCCACGGACAGCTTCGAAAagGAAAAGGACAAATGTTGGACGGGTATACACAAATGCTGATCTCGAGAAAGCTTTAGACGCGGTGAAAATGGGAATGCCAGTAAAGACAGCATCGAATCTTTACAAGATTCCGAAGACGACATTGCTCTACAAAAAGCGTGGTATATTACCGCCTGTAATAAAATCTCCTGGACCTGAATGCATACTTGGCGAAGAAAATGAACGCAAGCTCGTTGAGTGGATTTTGCATATGAATCGAAGCGGCTTCCCTCCAACTCGGGTCCAATTATTGGACAGTGTTCATCTGCTTCTAAAGCATCTAAAGATCAAGACTCAGTTTAAGGATAATCGCCCTGGGAGACATTGGTACGACGCTTTTAAAAATCGTCACCCGGAAATAGCTGAAAGAACGTCACAAAATTTGACGCACAATCAAACTGATTTAAGTGAGAAAAAGCTTCGAGGGTGGTTCAGCGAGGTACAGAAGTATTTTCAGTCGAAGTCACTTCTCGATATTGATGCTTCTCGCGTATTTAATTGCGAAGAGTCGGCTTTTTTTCTGAGTCCGAAGGAGGGCTCGGTATTGATCAAAAGAGGTGACAAAACCGTGTACAACTTTATCaataatgatgaaaaagaGTGCTTGACTACGCTCATCTGTGGAAATGCGAGCGGGGAATTCGCGCCACCGATGgtacttttttcttacaaaCGGATTCCCGGACATGTCGCTGCACGAATGCCTAAAGATTGGGGCATCGGTCGCTCGGACAGTGGGTGGATGACTGGAGAAACGTTTTTCGAATACGTCGCGAAGGTTTTTTACCGATGGTTGCTGAAGAATAAAGTCGTGTTCCCAGTCGTACTGTTTCTAGACGGGCATACTTCGCATTTGACCATGGCGTTAAGCAATTTTTGTAGAGAAAAACGCATCGAGCTCGTGGCGTTATACCCAAATGCAAGTCACATCTTACAGCCGATGGACGTCgcattttttcatcctctcAAGGATGCATGGGGGAATGTAGTTCGTCATTGGCGACTAGAAAATAACGGTCAACGTTTAAAGCGAGAAGACTTTGGACCGCTTCTTCAGAAAGCTATCGAGACTCTCGACGCAAAAAGTATTCTAAAAAATGGTTTCAAAACAACTGGGCTCCACCCTTTTTCAGCGGATGGAATTGACTACCAGCAGTTTTTTAAGAACGACGATAGCTCCGAAAAGATCACTCTGGTAACTCAAACCGAAGGATCTcggtataaagaatttttagagTATGTTGAAAATAACATCGAAACCGAAGTGCTGGAGATGTTCAGGGACGTTAAAGAAGGAGCACAATGGAGTGGCGATCTGGCACATCAAAGTTTATTCTACTTCTGGCGAAAAATTAAGGATATTAGTATCAATGCCAGCAAAGTCAGTCACGTAATTTCGGCCGACAACGTTGTCCAAGAAGGACACGTAGATGACAAAAATGAAGTTGCGATTTACAGTGAATATACGACGGATGAGGTGAAACAAGAAGTAAAACATGAAGACCTAGACGTCATGAAGATGCCTGAGTTCCTTCCAGTTGGAGACAATGTTTTGATTATCGGTAAACGAGATTTCGCACAATCTTTCAGCAGTCGACGCAGATTGTAA
- Protein Sequence
- MGTKETADSFIIPRTASKRKRTNVGRVYTNADLEKALDAVKMGMPVKTASNLYKIPKTTLLYKKRGILPPVIKSPGPECILGEENERKLVEWILHMNRSGFPPTRVQLLDSVHLLLKHLKIKTQFKDNRPGRHWYDAFKNRHPEIAERTSQNLTHNQTDLSEKKLRGWFSEVQKYFQSKSLLDIDASRVFNCEESAFFLSPKEGSVLIKRGDKTVYNFINNDEKECLTTLICGNASGEFAPPMVLFSYKRIPGHVAARMPKDWGIGRSDSGWMTGETFFEYVAKVFYRWLLKNKVVFPVVLFLDGHTSHLTMALSNFCREKRIELVALYPNASHILQPMDVAFFHPLKDAWGNVVRHWRLENNGQRLKREDFGPLLQKAIETLDAKSILKNGFKTTGLHPFSADGIDYQQFFKNDDSSEKITLVTQTEGSRYKEFLEYVENNIETEVLEMFRDVKEGAQWSGDLAHQSLFYFWRKIKDISINASKVSHVISADNVVQEGHVDDKNEVAIYSEYTTDEVKQEVKHEDLDVMKMPEFLPVGDNVLIIGKRDFAQSFSSRRRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00253486; iTF_00251992; iTF_00050736; iTF_00050735; iTF_01473840; iTF_01473099; iTF_01475371; iTF_01474605; iTF_01102716; iTF_01055910; iTF_01056727; iTF_01379134; iTF_00060128;
- 90% Identity
- iTF_00251992;
- 80% Identity
- -