Apic013043.1
Basic Information
- Insect
- Alloplasta piceator
- Gene Symbol
- -
- Assembly
- GCA_946863875.1
- Location
- OX333074.1:40810737-40812281[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9e-09 9.9e-06 25.9 0.0 1 40 23 61 23 63 0.94
Sequence Information
- Coding Sequence
- ATGGAAACTGCAGAATCTGCAGACTCATTCATCACTCCGCAGGCTGCTTCGAAAAGGCGGGCATACACAAATGCTGATCTCGAGAAAGCTGTAAACGCGGTGAAAACGGGAATGCCTATAAAGACAGCATCGAATCTTTTCAAGATTCCGAGGACGACATTACTCTACAAAAAGCGTGGTACATTACCACCTGTAATGAAATCTCCTGGACCTGAATGTATACttggcgaagaaaatgaacgcaagctcgttcagtggatttggcatatgagtcgaagcggcttccctgtaactcgggtccaattattggatagtattcaactgcttctgaaacatctaaagatggagactccgtttaaggataatcgccctgggagacattggtacgacggttttaaaaatcgtcacccggatatagctcaaaggctgtcacagaatttaaagcgcagtcaagctgatttaagtgagaggacgcttcgagggtggttcggcgaggttcaaaagtatcttcggtcgaagtcactccttgatattgacgcttctcgcgtatttaattgcgatgagtcggctttttttctgagtcccaaggagggctcggtattaaccaaaaaaggtaataaaactgagtacaatttcatcaataatgatgaaaaggagtgcttgaccacgctcatctgtggaagtgcgagcggggaactcgcgccaccgatggtacttttttcttacaaacggattcccggacatatctctgcacgaatgccaaaagactggggcatcggtcattctgacagtggatgggtgacgggagaaacgtttttcgagtacatcgccaacattttttaccgatggttgctgaacaatgaagtcgagttcccagtcatactgtttgtagacgggcatacttcgtatttgaccatggcgttaagcgatttttgtagggaaaaaggcatcgagctcgtggcgctatatccaaatgcaactcacatcttgcagccgttggacgtcgcattttttcatctcctcaagagtttgtggggaaatgtagtttatcattggcgactggaaaataacgGTCAACGTTTAAAGCGAGAAGACTTCGCACCGCTTCTTCAGAAAGGTATCCAGACTGTCGACGCAAAAAGTATTCTGAAAAACGGCTTCAAAACAACTGGGCTCCATCCTTTTTCAGCGGATGGAATTGACTACAAAAAGTTTTTCAAGAACGACGATAGCTCCGAAAGGATCCCTCCGGTGGTTAAAACCGAAGAACCTTGGCACACAGAATTTTTAGAATATTTTGAAAATAATATCGAAACCGAAGTGCTGGAGATGTTTCGAAACGTCGAAGAGGGAGCAGAGTGGAGTGGCGATCTGGCACATCAAAGTTTGTTCTACGTTTGGCGAAAGATTAAGAGTTGTTAA
- Protein Sequence
- METAESADSFITPQAASKRRAYTNADLEKAVNAVKTGMPIKTASNLFKIPRTTLLYKKRGTLPPVMKSPGPECILGEENERKLVQWIWHMSRSGFPVTRVQLLDSIQLLLKHLKMETPFKDNRPGRHWYDGFKNRHPDIAQRLSQNLKRSQADLSERTLRGWFGEVQKYLRSKSLLDIDASRVFNCDESAFFLSPKEGSVLTKKGNKTEYNFINNDEKECLTTLICGSASGELAPPMVLFSYKRIPGHISARMPKDWGIGHSDSGWVTGETFFEYIANIFYRWLLNNEVEFPVILFVDGHTSYLTMALSDFCREKGIELVALYPNATHILQPLDVAFFHLLKSLWGNVVYHWRLENNGQRLKREDFAPLLQKGIQTVDAKSILKNGFKTTGLHPFSADGIDYKKFFKNDDSSERIPPVVKTEEPWHTEFLEYFENNIETEVLEMFRNVEEGAEWSGDLAHQSLFYVWRKIKSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00254246;
- 90% Identity
- iTF_00050735;
- 80% Identity
- iTF_00050735;