Ntho011483.1
Basic Information
- Insect
- Netelia thomsonii
- Gene Symbol
- clz9
- Assembly
- GCA_964017225.1
- Location
- OZ024923.1:13110867-13112671[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-08 6.6e-06 25.9 0.0 1 40 17 55 17 57 0.93
Sequence Information
- Coding Sequence
- ATGGAGACTGTGGAGGAAGCGAAGAGGACAAATGTTGCACGAGCATACACAGATGCTGATCTCGAGAACGCCTTAGACGCGGTGAAAACGGGAATGCCTGTAAAGACGGCAGCGAATCTTTACAAAATTCCAAAGACGACACTGCTCTACAAAAAACGTGGCACATTACCACCCACAATAAAAACCCGTGGACCCGAATGCATACTTGGCATAGAAAATGAAAGTAAGCTCGTTCAGTGGGTTTTGCACATGAGTCGACGCGGCTTCCCTCCAACTCGATTCCAATTATTGGACAGTGTTCAATTGCTTCTGAAGCATCTAAAGATCGAGACTCAGTTTAAAGATAATCGGCCTGGGAGACATTGGTACGACGCTTTTAAAAATCGTCACCCCGAAATAACTGAAAGAACGTCACAAAATTTGACGCGCGATCGAGTTGATTTAAGCGAGAAAAAACTTCGAGGGTGGTTCAGCGAGGAAAAGAAGTATTTTCAGTCGAAGTCACTCCTTGATATTGACGCTTCTCGTGTATTTAATTGCGACGAGTCGGCTTTTTTTCTGAGTCCAAAGGGGGACTCGGTATTGACCAAAAAAGGTGACAAAACCGCATACAATTTCATTAATAATGACGAAAAAGAGTGTTTGACTACGCTTATCTGTGGAAGTGCGAGTGGTGAACTCGTGCCACCGATGGTACTTTTTCCTTATAAACGAATTCCCGGGCGTGTTGCTGCACGAATGCCAAAAGACTGGGGCATCGGTCACTCGGATAGTGGATGGATGACTGGTGAAACGTTTTTCGAGTACGTTGCGAATGTTTTTCATCGATGGTTGCTGAAGAATAAAGTCGTGTTTCCAGTCGTACTGTTTGTAGACGGACATACTTCGAATTTGACCATGGCGTTGAGCGATTTTTGTCGGGAAAAGGGCATCGAACTCGTGACGCTATACCCTAATGCAACCCACATTTTACAGCCGCTGGACGTtgcattttttcatcccctcaagAGTGTATGGGGGAATGTAGTTCGTCATCAGCGGCTAGAAAACAACGCTGAACGTTTAAAGCGAGAAGACTTCGCACCGCTTCTTCAGAAAGCTATCGAGGCTCTCGACGCAAAAAGCATACTGAAGAACGGTTTCAAAACAACCGGGCTCTACCCTTTTTCAGCGGATGGAATTAACTATGGGAAATTTTTTAAGAACGGCGATAGCTCCGAAAAGATCCCTCCGGTGACTCGAAGCAAAGGACCTCGGCACAAAGAAATTGTAGAGTATATTGAGAATAACATAGAAACCGAAGTGCTGGAGATGTTCAGAGACGTCAAAGAGGGAGCAGAATGGCGTGGCGATCTGACACATCTCAGTTTATTCCATTTCTGGCGAAAAATAAAGGGTAGTGGTATCGATGAAGCCAACGAAGTCAGTGACCCTATTTCAGCCAACGGCGTTGTCCCAAAAGGACACGTTGATGACGAGAATGAAGTTTCGGTAtattaa
- Protein Sequence
- METVEEAKRTNVARAYTDADLENALDAVKTGMPVKTAANLYKIPKTTLLYKKRGTLPPTIKTRGPECILGIENESKLVQWVLHMSRRGFPPTRFQLLDSVQLLLKHLKIETQFKDNRPGRHWYDAFKNRHPEITERTSQNLTRDRVDLSEKKLRGWFSEEKKYFQSKSLLDIDASRVFNCDESAFFLSPKGDSVLTKKGDKTAYNFINNDEKECLTTLICGSASGELVPPMVLFPYKRIPGRVAARMPKDWGIGHSDSGWMTGETFFEYVANVFHRWLLKNKVVFPVVLFVDGHTSNLTMALSDFCREKGIELVTLYPNATHILQPLDVAFFHPLKSVWGNVVRHQRLENNAERLKREDFAPLLQKAIEALDAKSILKNGFKTTGLYPFSADGINYGKFFKNGDSSEKIPPVTRSKGPRHKEIVEYIENNIETEVLEMFRDVKEGAEWRGDLTHLSLFHFWRKIKGSGIDEANEVSDPISANGVVPKGHVDDENEVSVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00254246;
- 90% Identity
- iTF_01102716;
- 80% Identity
- -