Ttro015248.1
Basic Information
- Insect
- Trachelus troglodyta
- Gene Symbol
- -
- Assembly
- GCA_030142635.1
- Location
- JARQTJ010002779.1:1627-3450[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-09 4.4e-06 26.4 0.0 1 40 62 100 62 102 0.94
Sequence Information
- Coding Sequence
- ATGGAAACTACGGAGGCAGCTGATCCATTGATTCCATCGAAAGCTTCAGTGGAAGggtataaaaaagaaattgtttggAAAGACTACGTCGAAGAAGCGATGGAGATTACAGAAATTGCAGACTCATCTATCACTCCACGGACTGCTTTGAAAAGgaaaaggaaaagtgttGCACGAGCATACACAAATGCTGATCTCGAAAAAGCCTTAGACGCGGTAAAAACAGGAATGCCTGTAAAAACAGCATCAAATCTTTACAAGATTCCGAGGACGACATTGCTCTATAAAAAGCGTGGTACATTACCACCTGTAATGAAATCTCCTGGACCTGAATGCATACTTGGCGAAGAAAATGAATGCAAACTTTTTGAGTGGATTTTGCACATGAATCAAAGAGGCTTCCCTCCAACTCGGGTCCAATTATTGGATAGTGTTCAACTGCTTATAAAGCATCTAAAGATCAAGACTCATTTTAAGGATAATCGCCCTGGAAGACATTGGTACAACGCTTTTAAAAATCGTCACCGGGAAATAGCTGAAATAATGTCACTAAATTTGACGCGCAATCGAGCTGATTTAAGTGAGAAAAAGCTTCGAGAGTGGTTCAGCGAGGTACGGAAGTATTTTCAGTCAAAGTCACTTCTTGATATTGATGCTTCTCGCGTATTTAATTGCGACGAGTCTGCTTTTTTTCTGACTCCGAAGAGGAGCTCGGTATTAACCAAAAAAGGTGACAAAACTGTGtacaatttcataaaaaatgatgaaaacgaGTGCTTGACTACGCTTGTCTGTGGAAGTGCGAGCGGGGAACTTGCGCCACCGATGGTACTTTTTCCTTACAAACGGATTCCTGGATATATCGCTGCACGAATGCCAAGAGACTGGGCGATCGGTCACTCGGACAGTGGGTGGATGACTGCGGAAACGTTTTTCGAATACGTCACGAACGTTTTTTACCGATGGTTGCTGAAGAATAAATTCGTGTTCCCAGTCGTACTGTTCGTAGACGGGCATACTTCGCATTTGACAATGGCGTTAAGCGATTTTTGTAGAGAAAAAGACATCGAGCTCATGGTGCTATACCCAAATGCAAGTCACATCTTGCAGCCGATCGACGtcgcattttttaattctctcaaGGGTGTATGGGGGAATTTTGTTTGTCATTGGCGACTAGAAAATGACGGTCAACGTTTAAGGCGAGAAGACTTTGCACCGCTTCTTCAAAAAGCTATCGAGACTCTCGACACAAAAAGTATTCTTAAAAATGGCTTCAAGACAACTGGGCTCCATCCTTTTTCAGCGGATGCTATTGACTACCAGAAGTTTTTTAGGAACGGCGATAGCTCCGAAGAGATCCCTCTGGTGATTCAAACCGAAAGACCTGGGTATAAAGAACTCTTAGAGTGTGTTGAAAGTAACATAGAAACCGAAGTGCTGGAGATGTTCAGAGACGTTAAACAGGGAGAAGAATGGAGTGGCGATCTGGTACATCAGAGTTTATTCTACTTATGGCGAAAGATTAAGGACTGTATCAATGTCAGTGAAATCAATCACGCTATTTCAGGTGATAGCGTTGTCGAAGAAGGACAcgtagatgaaaaaaatggagttTCGGTACTTTAA
- Protein Sequence
- METTEAADPLIPSKASVEGYKKEIVWKDYVEEAMEITEIADSSITPRTALKRKRKSVARAYTNADLEKALDAVKTGMPVKTASNLYKIPRTTLLYKKRGTLPPVMKSPGPECILGEENECKLFEWILHMNQRGFPPTRVQLLDSVQLLIKHLKIKTHFKDNRPGRHWYNAFKNRHREIAEIMSLNLTRNRADLSEKKLREWFSEVRKYFQSKSLLDIDASRVFNCDESAFFLTPKRSSVLTKKGDKTVYNFIKNDENECLTTLVCGSASGELAPPMVLFPYKRIPGYIAARMPRDWAIGHSDSGWMTAETFFEYVTNVFYRWLLKNKFVFPVVLFVDGHTSHLTMALSDFCREKDIELMVLYPNASHILQPIDVAFFNSLKGVWGNFVCHWRLENDGQRLRREDFAPLLQKAIETLDTKSILKNGFKTTGLHPFSADAIDYQKFFRNGDSSEEIPLVIQTERPGYKELLECVESNIETEVLEMFRDVKQGEEWSGDLVHQSLFYLWRKIKDCINVSEINHAISGDSVVEEGHVDEKNGVSVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00254246;
- 90% Identity
- iTF_01473840;
- 80% Identity
- -