Bvim025833.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- egg
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000276.1:572467-639917[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9 1.8e+04 -3.0 0.1 29 38 742 751 713 752 0.80 2 2 1.8e-12 8.2e-09 36.6 0.0 4 73 783 845 780 849 0.87
Sequence Information
- Coding Sequence
- ATGTACGGCGCGTACGGCGAAGAGAAGTACGTGTTCCTCGTGCAAAGGCCTACGGCCGACTGCCGCCCGTCGACCGCGCAGAACTTACAAGAAGTACAAAAGGAAACGGAACCAGAGACAACAGAGGACGATAAATCTCCTTCCCCGGAAACTGATGTTACCAACGTTAACATACCAACGGCCATTGACATAATGTGTACTTCAGGCGGAAATACGTCAGAGATAACGACTAAAGATAACCTCTCTCAGGTTGTTATCAGTGGCGTGCCTAAGCCGCCGCCGCACAAGCCTgccAGATTGAATACCAGTGAAGTTACGATCAAAACTGTTAGTAACACTGAACCAATGAATATACCTGAAACTAAGATTAATGAGCAGATTCAAACATCTAAACCTAAGCTGAGCCTAGAAATATTCAGTCTGGATTCTGACGACGATGAAAGTGCTCCTAAAGAAAAATCACTACCAACATCCCCCCACAAAATGACAGCGATAGAACTAGAAAAAGCGCGAGAATCATCCAAATGTATTAACTATTGTTGCAAAAGCGACAATAAAGTACCTTACAAACTGGCGGATGCGTCAGTGATCGCGTACTACGACGCGGGCAGGAAGAGACGCTCCATGGTCTGCCAGCCGTGCGCCGATGTGGTCGCTGTTAGAACTATGAATCAGATCCAAGGCGTAAAGGATCTAACTCCACTGTTATACCTAGATATGGGCAAGTTATCACAAGACCTGGTGGAGATATCTGACTCGGAGTCTGAAGACGAGGATATGACTCCTGAAGAACCCAAGGAGAGTATCGGAGAGAAGGGGGCCAAATTCGTAGAAGACAATCTGGCCAAGTATTTGAACGACACATGGAAGAAATACGACATGGACGTGCGGCTCAAAGAGACACAGATTATGTTAGATGATGAGATTGAAAAGCTTGAACtgGAAAGCAAAGAAATAGACGCAATGCTAAACGAGTGTCAGGTAGCGACCGACAATCTTCGCTTCGAGTTATACGCGACGTTCGAGTGTCGGCGACAAAAACTACCCGCCTTAGCTATATACGACACGCCTGACTCTCAAACTCGTCAAGCTAAGCGTCGTTTGTCGTTAACCAGTGAGACTCCAGCTAAGCGCCCTGCCATACCTCTTGGATACGCACCATTAGATGCTGGCGACTCTACTAAGGAAAAAGCAGCAATTCCCGGACCAGATAATAAACTAGATGATGACAAAGACATATCAGTAGTGAAACTCTCAGCGGAAGCCGCCCCCGCAGACCTGCCTCCCCCCGGCGAGATCTCCCGCCCGCCCCTGCGCCTGGGCATGCCGGTCTACGCCATGAAGAACGCCTTCGGACCCTGGCTTAAAGGCAGGGTGGTGGAGATACAGCCCAAGAATATTTCTGGGGGCAACCCATTCTCTCTGTGTCTTGTGAAATTCGACCACAAACTCAAGACTAATGGGAAAGTGTTGCTTGCAAGGTGCATCGCGTATTCTGAGCCGGCTGATGTTAGAATGACAATTGGTACTCGCCTCATAGCCCTGTTCAAAGATTCTAACAAGCGTGAGTCTTATTACTCGGGTGTTGTAGCTGAAATACCTAATCCAGTCAATAATTATAGATACCTAGTATTCTTCGACGACGGCTACGCTCAATACGTCCAACATCAATTCACCCGCCTAGTCTGCGAAAGTTCCCCCTTAGTATGGGAGGAAGTACATCCATTCTCGCGGGAATTCGTCCGCGAGTACCTGATGGCGTACCCAGAGAGACCCATGGTCAGACTGCATGAGGGACAGCATCTGAAGACTGAGTGGAACGGAAAATGGTGGTCATCCCGAGTGACCCGAGTGGACGCGTCGCTGGCTCAAGTGATGTTCGTGGGCGACGGGCGGCGCGAGTGGATCTACCGCGGCTCCACGCGCCTCGCTCCCTTGTACCTCGAGCTGCGCGCCGCCGAGCGACACCGGCCCCGACCCATGCCGCGGAGCAAGGCGCAGCCCAGGTTCAATATGCCGTACGTGGAGTACACTCGGTCGGATGAGCAGGAGTCGACCATGCAAGTGGATGCGCAAGCGCAGCAGCAACAACAGCAGCAGCACCAGATACAAAATGAGGAGATACGTCGCCAACGCGCCGTGGCCAAGAAGTCTACGTCAGTACCCCCCCCTAAAGTGCTCCCGCCATCACAACAGGTCATGCCCCCCACACACACGGATGAGGTCACCAGCAGAGTTGTGTACTACACACCAAAGAATGCGGTGAAACCATTGAAGATGACGCCACACAGATGTGGTCCGAGGTGCAAGAGAAGTGACGTGCTCTCGCTAAAGGAGTTGAGGACTTATAATCCTCTAGCCAAACCACTGCTCAGTGGATGGGAAAGACAAATAGTCCGCTTCAAAGGGCACAAGGAAGTGATGTACCGCGCGCCCTGCGGCCGTCGCTTACGAAACATGCGCGAGTTACATCACTACTTACGTTTAATAGACAGCGACTTGCCTGTGGATCTATTTGATTTCCACTACTCGACGCATTGTCTAGCAGAGTTCGTGCTCAACAAATGTCTTGTGGGGAAAAAGGACCTCTCCCACGGCAAAGAGAACGTCCCGGTGCCCTGCGTGAACTATTACGACGACTCCTTACCAGAGTTCTGTTCGTACAACACCGAACGCACACCCACCGCCGGCGTGCCACTCAACCTGGAGCCCGAGTTCTTGTGTGGATGTGATTGTACCGATGACTGTCAGGATAAATCAAAATGCGCTTGTTGGAAAATGACGCTAGAGGGCGCTCGCACTATCGGGCTACGTGGCCCTAATGTGGGCTATGTTTACAAGAGACTGCCCGAACcgttaccttctgggatatacGAGTGTAATTCTAGGTGTAAATGCAAGAATACATGTTTAAACCGCGTAGCGCAACATCCACTACAATTGAAATTACAGGTTTTCAAAACTCCGAACCGTGGTTGGGGTATTCGGGCGCTGAACGACGTGCCAAAAGGCTCCTTCCTATGCGTGTACGCTGGTAACCTGCTCACAGATGCTACGGCTAACTTGGACGGTTTGAACGAGGGCGACGAATACTTAGCAGAATTAGATTATATAGAAGTCGTGGAACAAATGAAAGAGGGATATGAAGAGGATATTCCTGATGTCGATAAAAAATTAGACAAGAAAGAAGGTAAGGACGACGACGACACTGACGAGGATGTACCGTCATCCTCCGAGGAAGAGGAGACTGCTGATAAGAATGACAAGGAAGATGATGACTTCAGACCGGGATACATTGGTCTTGGCGTCTCGGAGTTCAGCAAACGCCTCCGAAAACGCGAAAAGTCAAAGAAAGGTATAGAACACCCGGCGGCCGACGagaaagaaaaggaaaataCGACCAAAGAATCGAATGTTGAAGAAGATTGTATTACTATTAGTGATGACGAAGAAGTTCGAGAACCTTCAAGATTCATGGCACAAACTATCATGGGAGCTAACGAATATATTTCTAAATACAAGTCTGTTCGCACGTTATTCGGTAAAGACGAGGCGTGCTATATCATGGACGCTAAGGTTCAAGGCAACATTGGCAGATATCTCAATCACTCTTGCTGCCCGAATGTCTTCGTACAAAACGTGTTTGTGGACACCCACGACCCTCGTTTCCCTTGGGTGGCGTTCTTCGCGCTATCACACATCAAAGCAGGTTCCGAGCTCACTTGGAATTACAACTATGACGTGGGATCCGTTCCCGGGAAGATACTGTACTGTTACTGCGGAGCTGCTAACTGTAGAGGACGGCTGTTGTAA
- Protein Sequence
- MYGAYGEEKYVFLVQRPTADCRPSTAQNLQEVQKETEPETTEDDKSPSPETDVTNVNIPTAIDIMCTSGGNTSEITTKDNLSQVVISGVPKPPPHKPARLNTSEVTIKTVSNTEPMNIPETKINEQIQTSKPKLSLEIFSLDSDDDESAPKEKSLPTSPHKMTAIELEKARESSKCINYCCKSDNKVPYKLADASVIAYYDAGRKRRSMVCQPCADVVAVRTMNQIQGVKDLTPLLYLDMGKLSQDLVEISDSESEDEDMTPEEPKESIGEKGAKFVEDNLAKYLNDTWKKYDMDVRLKETQIMLDDEIEKLELESKEIDAMLNECQVATDNLRFELYATFECRRQKLPALAIYDTPDSQTRQAKRRLSLTSETPAKRPAIPLGYAPLDAGDSTKEKAAIPGPDNKLDDDKDISVVKLSAEAAPADLPPPGEISRPPLRLGMPVYAMKNAFGPWLKGRVVEIQPKNISGGNPFSLCLVKFDHKLKTNGKVLLARCIAYSEPADVRMTIGTRLIALFKDSNKRESYYSGVVAEIPNPVNNYRYLVFFDDGYAQYVQHQFTRLVCESSPLVWEEVHPFSREFVREYLMAYPERPMVRLHEGQHLKTEWNGKWWSSRVTRVDASLAQVMFVGDGRREWIYRGSTRLAPLYLELRAAERHRPRPMPRSKAQPRFNMPYVEYTRSDEQESTMQVDAQAQQQQQQQHQIQNEEIRRQRAVAKKSTSVPPPKVLPPSQQVMPPTHTDEVTSRVVYYTPKNAVKPLKMTPHRCGPRCKRSDVLSLKELRTYNPLAKPLLSGWERQIVRFKGHKEVMYRAPCGRRLRNMRELHHYLRLIDSDLPVDLFDFHYSTHCLAEFVLNKCLVGKKDLSHGKENVPVPCVNYYDDSLPEFCSYNTERTPTAGVPLNLEPEFLCGCDCTDDCQDKSKCACWKMTLEGARTIGLRGPNVGYVYKRLPEPLPSGIYECNSRCKCKNTCLNRVAQHPLQLKLQVFKTPNRGWGIRALNDVPKGSFLCVYAGNLLTDATANLDGLNEGDEYLAELDYIEVVEQMKEGYEEDIPDVDKKLDKKEGKDDDDTDEDVPSSSEEEETADKNDKEDDDFRPGYIGLGVSEFSKRLRKREKSKKGIEHPAADEKEKENTTKESNVEEDCITISDDEEVREPSRFMAQTIMGANEYISKYKSVRTLFGKDEACYIMDAKVQGNIGRYLNHSCCPNVFVQNVFVDTHDPRFPWVAFFALSHIKAGSELTWNYNYDVGSVPGKILYCYCGAANCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01441120;
- 90% Identity
- iTF_00124298; iTF_00123403; iTF_00121468;
- 80% Identity
- -