Bopu010302.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus opulentus
Gene Symbol
TFIP11
Assembly
GCA_034509555.1
Location
CM067418.1:1973789-1977066[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.8e-70 2.5e-66 224.2 19.4 78 275 396 585 368 585 0.90
2 2 0.0036 23 4.6 0.2 244 272 599 627 591 630 0.88

Sequence Information

Coding Sequence
ATGTCAGAAAACGAAGTAGAAAGCTTCGAAATCACTGATTACGACCTTGAGAATGAATTCAATATTAATCGTCCTAGGcgtaaattatcaaaaaaacAACAAATGCTTGgTGTTTGGGGCGATGATAGCGACGAAGATGAATTATCCGCTAGACCATCGTTTAAGACATTTGATAAAGGACCAAAGAATTATACGACTCCTGTAAATTTTGTAGCAGGAGGTATTCAACAAGCTGGGAAGCCTAAAGACGAGACGAAGGACAAAGATGACGATGAAAGCGACAACGGGAGCAAATCACAAAAAGAATTTCCAAATAGTTCGAGTTCTGAAGATGAGAAACCGAGTTCTGTGCATCAACGTACGTCGTTTTCGTTAAATACGGATGGGGATATTGCAGGTTTACGTAAAAAGAAGCATAAAGTAAACCCCTTATTAATGCAAAGTGGGATGGGAAGTTGGGAAGTCTATACAAAAGGTATTGGTGCCAAGTTGTTGCTACagATGGGCTTTGAACCTGGAAAAGGATTGGGTAAACAGTTACAAGGTATAAGCGCGCCAGTTGAAGCACATCTGAGGAAAGGTAGAGGTGCGATTGGTGCTTATGGACCAGAAAAAGGTCCTAAAGTtgcagaaaagaagaaagacgaagaaatagaagaaggGAAAGATCCCAAAGCTAAATTATCACAGTGGAGGAAAGGAGATGGAAATACTCTtaagagaaaagtaaattatatatatcgaagTGTTGATCAAGTTTTGGAAGATGGGAAATTGAAACCTAACAAAAAGACAAGAATATCCAACAAGATGAGTAGGGTTAAAGTTATAGATATGACTGGCCCGGAACAAAGAATTCTTAGTGGATATCATGCTATAGCTGGAGGTCAACAGCGACCCAACGAAAACGTCGTAGTTACTGATAAAAAGTCCAGAGTTAATTTTGCATTGCCAGAACTTCagcataatttaaatatacttgtgGATATGTGTGAGCaagatattatacaaaacGATAGAAGGACACGGCATCTAAGTGATAGAGTAATTGCACTAGAGGCAGAGAAGAAAAACTTGTCTAAAGTTATAGATCAACACGGTCAGGTAATAGATACGTTAGAAAACGTTCTTGCAATCGTAGACAGATTGATGGATGAAACAAATCAATTAACGTTACAAGAAACTGCGGACGCTTTTAAAGATTTAcaagataaatattacgaggaatataaaatacaGTGGACATGTAGGCAGCCAGAACCACTAATTGAATTAATAGAACATTGGATCCCACTACTTCCAAATTggatattagaaaatattttagatatgcTGGTTCTCCCCAAACTCACTTTGGAAGTAGAAGAATGGAATCCCCTTACTGATACAGTGCCTATTCACACATGGATTCATCCTTGGTTACCACTTCtacgaAATCGTTTAGATACTTTAATATATCCAATAATACGACGTAAATTAGGATCCGCATTGGGTGGTTGGCACCCGTCTGACAGATCTGCCAGATTAATGTTACAACCATGGTCTAATGTTTTCGCAAAAGGAGATATGGAAGCCTTCCTGGTGAAAAATATCATCCCAAAATTGCAAATAGCTCTTTCGGAATTTGTTATAAATCCCCATCAGCAACATTTAGATCAATGGAACTGGGTATACGAATGGAAGGACTTACTTCCATCTCATATAATGGCAGGCCTGTtggataaattctttttccctAAATGGTTACAAGTTTTGGCCTTGTGGCTAAATCATTCTCCTAACTTTGATCAAGTTACAAATTGGTATATGGGATGGAAAAGTAtgttgaatgaaaaaatattggcCGAACCGTTGGTGAAAGAACATTTCAAAAAAGCGTTAGAAATAATGAATAGAGCAGTTTCCGTGCCACAGAGTCATCAACCAGGTGCAATGGAACAAGTTTCCTATTTAACGAGCTTAGAAAGAAGTCAACCGACTATGTCACAAATGCCTTCAACAGCTCAACCAAGAATGGAGAGACTTGCCGAAGCAGTTAGGACAGTATCACAAATACCTCATGGTTTCAAAGACCTTGTACAAAAGAAGTGCGAGGAAAAAGGTATATTGTTTATGCCAATACCGAATCGGTACAGGGAAGCAAAGCAAGTTTATAAAGTTGGTAATGTCCAAGCTTATATAGATGGAAatgttttattcgtttgtcACAATGGCATGAATTGGATGCCAACACATCTAAATGCTTTACTAGACATGTCTGAActttaa
Protein Sequence
MSENEVESFEITDYDLENEFNINRPRRKLSKKQQMLGVWGDDSDEDELSARPSFKTFDKGPKNYTTPVNFVAGGIQQAGKPKDETKDKDDDESDNGSKSQKEFPNSSSSEDEKPSSVHQRTSFSLNTDGDIAGLRKKKHKVNPLLMQSGMGSWEVYTKGIGAKLLLQMGFEPGKGLGKQLQGISAPVEAHLRKGRGAIGAYGPEKGPKVAEKKKDEEIEEGKDPKAKLSQWRKGDGNTLKRKVNYIYRSVDQVLEDGKLKPNKKTRISNKMSRVKVIDMTGPEQRILSGYHAIAGGQQRPNENVVVTDKKSRVNFALPELQHNLNILVDMCEQDIIQNDRRTRHLSDRVIALEAEKKNLSKVIDQHGQVIDTLENVLAIVDRLMDETNQLTLQETADAFKDLQDKYYEEYKIQWTCRQPEPLIELIEHWIPLLPNWILENILDMLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWSNVFAKGDMEAFLVKNIIPKLQIALSEFVINPHQQHLDQWNWVYEWKDLLPSHIMAGLLDKFFFPKWLQVLALWLNHSPNFDQVTNWYMGWKSMLNEKILAEPLVKEHFKKALEIMNRAVSVPQSHQPGAMEQVSYLTSLERSQPTMSQMPSTAQPRMERLAEAVRTVSQIPHGFKDLVQKKCEEKGILFMPIPNRYREAKQVYKVGNVQAYIDGNVLFVCHNGMNWMPTHLNALLDMSEL