Ngoo001558.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nomada goodeniana
Gene Symbol
tfip11
Assembly
GCA_963969485.1
Location
OZ018299.1:24719832-24722934[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.1e-101 4.7e-98 328.1 15.8 1 275 395 662 395 662 0.99
2 2 0.0039 16 4.9 0.1 244 273 676 705 667 707 0.88

Sequence Information

Coding Sequence
atgtcTGAGGACGAAGTAGAAAGTTTTGAAATTACGGATTACGATCTCGACAATGAATTTAACATTAATCGTCCCCGACGTAAATTATCCAAGAAACAACAAATGCTTGGTATTTGGGCTGACGACAGTGATGAAGATGAATTATCTGCTAGACCCTCCTTTAAAACGTTTGATAAAGGACCAAAGAATTATACGACGCCCGTAAATTTTGTAGCAGGAGGTATTCAACAGGCTGGAAAGCCAAAAGAAGAAACCGAGGATAAAGATGACGATGATAGTGACAatgataatgtaaataaaactCAAAGAGAATTTGGAAACAGTTCAAgTAGTTCTGAAGATGAAAGGGCAATTAATGTGCAACCACGTGCATCATTTTTGCTAAATACAGATGGAGATATTGCAGGcttacgtaaaaaaaaacataaagtGAATCCCCTATTGATGCAAACTGGAATGGGCAGTTGGGAAGTCTACACAAAAGGTATTGGCGCTAAATTGTTGCTACAGATGGGCTTCGAACCCGGGAAAGGTTTAGGTAAACAATTGCAAGGTATTAGTGCTCCAGTAGAAGCGCATTTAAGAAAAGGCAGAGGTGCAATTGGAGCTTATGGCCCAGAAAAAGTGCCAAAAGTTCCagataagaaaaaagaagaagatacaGAAGATGGAAAGGAATCGAAAGCCAAATTATCACAGTGGCGGAAAGCAGATGGGAATATGGTGAAGAAGAAAGTAAATTATGTATATCGAAGTGTTGATCAAGTTTTAGAAGATGGAAAATTAAAACCAAACAGGAAAGTGAGAATATCAAATGAAATGAGCAGGGTTAAAGTCATAGATATGACCGGGCCAGAACAGAGAATTCTCAGCGGATATCATGCAATAGCTGGAGGTCAACAAAGACCTGACGAAACAGTTACAGTACCAGATAAGAAGTCTAAGGTCAATTTTGCACTACCCGAACTTCAACACAACTTGAACATACTTGTGGACATGTGTGAGCaagatataatacaaaatgatAGAAGAACACGGCATTTGGGTGACAGAGTGGTAGCTTTAGAAGCGGAGAAGAAGAATTTGTCTAAGGTTGTAGATCAGCAGGATCAGCTTATCGACACTTTGGAAAACGTTCTTGGAATTGTGGACAGATTAATGGATGAAACAAATCAGTTAACATTACAAGAAACTGCAGAAGCTTTCAAAGATTTGCAAGACAAATATTACGAAGAGTATAAAATGTATGAGCTCGGCGAATTAGCTAGCAGTTTTGTAGGgccgaaaataaaagaatgtcTAGTTAGCTGGAATCCATTATTGCAGCCAAAGCAACCagttaaattatttgaacagtGGAAAAGTATTTTAGAAAGTGGCATTACTACTCTTCAAACAAGAAGCATGAATCCGTATGACCACTTAGTTTGGAATGCATGGATGCCATCAATTAGAGGAGCTATACAGCAATGGACGTGCAGGCAACCAGAtccattaattgaattaatcgaGTACTGGATGCCATTGCTTCCAAGCTGGAtactggaaaatattttagattTGTTGATTCTTCCTAAACTTACTTTGGAAGTAGAAGAATGGAATCCTCTCACAGATACAGTACCAATACATACGTGGATTCATCCTTGGTTACCACTTTTGCGAAATCGCCTAGATACTTTAATATATCCAATTATCCGACGCAAACTGGGATCTGCGTTAGGCGGTTGGCATCCATCTGATAGATCTGCTAGGCTGATGTTACAACCATGGGCAAATGTGTTTGCAAAGGGAGACATGGAAGTCTTTctagtgaaaaatattattccaaaaTTGCAAATAGCACTATCTGAATTTGTCATAAATCCGCATCAGCAGCATTTGGATCAATGGAATTGGGTATATGAATGGAAGGAATTAATACCGTCGCATATAATAGCGGGGTTGCTCGACAAATTCTTCTTCCCTAAATGGTTACAAGTATTGGCACTTTGGCTCAATCATTCACCTAACTATGATCAAGTTACTAATTGGTACATGGGTTGGAAAGGCATGTTGAGTGAAAAACTATTGGCAGAACCGTTagtaaaagAACACTTCAAAAAAGCATTAGACATGATGAACAGAGCAGTCTCTGCGCCGCAAAGTCAACAACCCGGTGCTATGGAACAAGTTTCGTATTTAACAAGCTTAGAAAGAACTCAACCCACTATGTCACAAATGCCTCCGACTGCTCAGCCAAGAATGGAGAGGCTCGCTGAAGCAGTCAGAATAGCATCGCAAGTCCCTCATGGATTTAAAGACCTTGTACAAAAGAAATGCGAAGAGCgaggtattttatttatgccTATACCAAATCGGTATAGAGAAGCGAAACAAGTTTACAAAGTCGGCAATGTCCAAGCGTATATAGATGGAAACGTCCTATTTGTATGTCACAATGGTATAAATTGGATGCCAACACACCTAAACGCTTTATTAGATATGTCTGAACTCTAG
Protein Sequence
MSEDEVESFEITDYDLDNEFNINRPRRKLSKKQQMLGIWADDSDEDELSARPSFKTFDKGPKNYTTPVNFVAGGIQQAGKPKEETEDKDDDDSDNDNVNKTQREFGNSSSSSEDERAINVQPRASFLLNTDGDIAGLRKKKHKVNPLLMQTGMGSWEVYTKGIGAKLLLQMGFEPGKGLGKQLQGISAPVEAHLRKGRGAIGAYGPEKVPKVPDKKKEEDTEDGKESKAKLSQWRKADGNMVKKKVNYVYRSVDQVLEDGKLKPNRKVRISNEMSRVKVIDMTGPEQRILSGYHAIAGGQQRPDETVTVPDKKSKVNFALPELQHNLNILVDMCEQDIIQNDRRTRHLGDRVVALEAEKKNLSKVVDQQDQLIDTLENVLGIVDRLMDETNQLTLQETAEAFKDLQDKYYEEYKMYELGELASSFVGPKIKECLVSWNPLLQPKQPVKLFEQWKSILESGITTLQTRSMNPYDHLVWNAWMPSIRGAIQQWTCRQPDPLIELIEYWMPLLPSWILENILDLLILPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWANVFAKGDMEVFLVKNIIPKLQIALSEFVINPHQQHLDQWNWVYEWKELIPSHIIAGLLDKFFFPKWLQVLALWLNHSPNYDQVTNWYMGWKGMLSEKLLAEPLVKEHFKKALDMMNRAVSAPQSQQPGAMEQVSYLTSLERTQPTMSQMPPTAQPRMERLAEAVRIASQVPHGFKDLVQKKCEERGILFMPIPNRYREAKQVYKVGNVQAYIDGNVLFVCHNGINWMPTHLNALLDMSEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00223870;
90% Identity
iTF_00118005;
80% Identity
-