Basic Information

Insect: Bombus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_014825975.1
Location: CM026170.1:1606238-1609896[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.12 11 6.8 2.3 1 23 152 174 152 174 0.94

2 18 0.00028 0.025 15.1 1.4 2 23 209 230 208 230 0.98

3 18 0.0012 0.11 13.1 0.6 1 23 283 305 283 305 0.96

4 18 0.0015 0.14 12.8 0.3 2 23 309 330 308 330 0.96

5 18 0.21 19 6.0 3.6 1 23 403 426 403 426 0.94

6 18 0.00031 0.028 14.9 0.7 1 21 432 452 432 456 0.92

7 18 0.0011 0.1 13.2 2.9 2 23 535 556 534 556 0.95

8 18 2.1e-05 0.0019 18.7 4.1 1 23 612 634 612 634 0.97

9 18 0.00021 0.019 15.5 0.7 1 20 639 658 639 660 0.94

10 18 0.035 3.2 8.5 0.6 2 23 671 692 671 692 0.97

11 18 2.1e-05 0.0019 18.6 0.6 2 23 731 752 730 752 0.97

12 18 1.9e-05 0.0017 18.7 1.6 1 23 757 779 757 779 0.95

13 18 0.00011 0.0097 16.4 2.9 1 23 785 807 785 807 0.98

14 18 3.4e-06 0.00031 21.1 0.4 1 23 823 845 823 845 0.95

15 18 2.8e-07 2.5e-05 24.5 0.6 1 23 851 873 851 873 0.99

16 18 1.7e-05 0.0015 18.9 0.2 1 23 879 901 879 901 0.98

17 18 0.00011 0.01 16.4 4.1 1 23 907 929 907 929 0.96

18 18 0.0073 0.66 10.6 0.3 1 20 935 954 935 956 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.12	11	6.8	2.3	1	23	152	174	152	174	0.94
2	18	0.00028	0.025	15.1	1.4	2	23	209	230	208	230	0.98
3	18	0.0012	0.11	13.1	0.6	1	23	283	305	283	305	0.96
4	18	0.0015	0.14	12.8	0.3	2	23	309	330	308	330	0.96
5	18	0.21	19	6.0	3.6	1	23	403	426	403	426	0.94
6	18	0.00031	0.028	14.9	0.7	1	21	432	452	432	456	0.92
7	18	0.0011	0.1	13.2	2.9	2	23	535	556	534	556	0.95
8	18	2.1e-05	0.0019	18.7	4.1	1	23	612	634	612	634	0.97
9	18	0.00021	0.019	15.5	0.7	1	20	639	658	639	660	0.94
10	18	0.035	3.2	8.5	0.6	2	23	671	692	671	692	0.97
11	18	2.1e-05	0.0019	18.6	0.6	2	23	731	752	730	752	0.97
12	18	1.9e-05	0.0017	18.7	1.6	1	23	757	779	757	779	0.95
13	18	0.00011	0.0097	16.4	2.9	1	23	785	807	785	807	0.98
14	18	3.4e-06	0.00031	21.1	0.4	1	23	823	845	823	845	0.95
15	18	2.8e-07	2.5e-05	24.5	0.6	1	23	851	873	851	873	0.99
16	18	1.7e-05	0.0015	18.9	0.2	1	23	879	901	879	901	0.98
17	18	0.00011	0.01	16.4	4.1	1	23	907	929	907	929	0.96
18	18	0.0073	0.66	10.6	0.3	1	20	935	954	935	956	0.89

Sequence Information

Coding Sequence: ATGGAGGAGGTAATCGATCAAACTATCGCTACAGAGCAGACATCGGGAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACGAAGAAATGTTAAAACACGAAAACGGGGATAACGATTGCCTTGAAAATATTTCAACGAGGGAGGATTGTACCGAGTACGTAGATCTATTGGTAAAAGCAGCTGATGCAACGACAAAACAAGAAAATGAGGAGGAAGATGAAGAAGAAGAAAAATCGGATATTACGAACACAGTTGTTCAGCCCGATGCAGATTCTCAGTGTCAAAATGAAACGAGGAGAAGCAAACGTAAATTAGTTCGGCGAAATTTTGAAACGAGACGAGATTCCGACGAGGAAAACTATTTTGAAAATTTGAATTTAAGCTCGAGATTGAAGAAAGGTCAATCTTCTGATCAATCGGAAAAAATTTTTCTATGTTATCTGTGCGACAAAGAGTTTTTATCGAAGAATGTTTTGAAGGAGCATATGCATTCTCACGAAGAAGTTCGAAAGGTATTGTCTCTGAAAAAAACACCGGATACACCGCAAAAGAATGTTTATAATGTTACAAAGTCTCCTCCATCGGGTAAGAGATCAAACAAGTGCCCGTATTGTGGCAAGCAATACATATATATAACCTCGTTTAGTAAACATTTGAAAAAACACGAAAGGGAGAAAGAAGAGGGCAAGGAAGAATCAATGCCCTTAGAAATATCATTCCACGAAGATGAACATAGTCTAGATCTTGATAATTATAAAGATGCACGTCGGCATTTGGATAACGAGTATCGGAAAAAAGTCAAACAAAAAGAGGTGGAAACGTTTGCATGCGACAAGTGTGCAGAGAAATTTTATACAAAACGTGGCTTACAAAAACATGCGATTTCGCATGTTGTTCTTAGTTGCAGCATATGCGAAGAAGAATTCGATTCACTGGAAAAATTAAGAAACCATCGCGCGAAGCACGTAGTTGAAGGTGTTCTAACTGAACAAGAACTTGAGATGGATACAGAATATCCAATTAATAAGGAAACGTGTGATTACGAGACAGAGGATAAAGATAGCATAGACAGGAATCACAAGATGGAAAACAAATCAATACCAGGATTGCTGGAGACAGAAAATAATTTATCGAAGAAAAATGATAGAAACATGGAGACCCATCGTCATTCGGGGATTGACTATAGTTGCAAGATGTGTTGCCAACGATTTGCAATGAAAGAAATGTTGCAAAAACACACGGAACAGCAACATGAACGTGTAAAAACTTACAAGTGCACACAATGTAACAAAACATTTGGTAACGAACTTACTTTACGCAATCATCTTATAGCTACTAATCATAAAACTTTTCTTCATGGGCAAGAATATGACCCTAATAAACGTATTAAAAGAGTTGCTGCGAGAGCTGCACAAAAAATTATTGATAAAATTAAAACCGAGGATGGTTTGGAAGATTTCGACGAGGAAGAGGAGAATATCGATAGAATTAATCGCGCTAATGTTACAGATAATAATTGTAGTCGGAATAAGCGAGAAATATCCTCGCATAAGAGACATAATCATAAGAAAGAATTGGAATGTGCGAGTTGCAATAAAAGATGCAGTTCAAAGCAATTGTTAACAAAACATATGGAGCAACATGTAAAAGACGAACAACGAGTGGTCAAGTCGGAAAAACAAAAGCAATCGGCAGATAAGAAAGATTGGCAAAGGGACTATGCTAATGAGGAGATGTATCACAAGGAGAATAGAGATGACGATTATGATTCGGATTTCGAAAGTGGTTTGGATTGGCCAATGGATAATCACGAGTGCCCGAAGTGTAAAAAACGATACAGCACGAAAAAATCATTGTTACGTCATCAATTGTTGCACGAAGAACCGAATTTCGAATGCGATATTTGCAATGTTAAGTTTTACCGCAAAGATAAACTAAAAGCCCATTATGATAAGTGTTCGGAGAAGAACCCTGATCAAGTGAGAAAGTGCAATATCTGCGGAGACACGTTTGAGAACAATGAGATTCTGCGAGAACATAGATCAAAACATGTTACCGAAGGTATTCTTACGGAAGAAGACCTGAGAGATATTGAACCGCGACCCGAGGAGAAAAAGCCAGGTGAAAAGATTGGTAGAAAGAGAAGGACTGATATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATATACATCGAGAAAAGGGCTTTTACGACATATTCAAGTCCATGAAGGGAAAAAGTATCTGTGTGATATATGTCCAAAAAAGTTTTATAGAAGGGAACATTTAAAGATACACGTAGCTAAACATAACATGATTAAGCCATATAAGTGCACACGATGCACAAAGCGTTTCATTAAAGAAGAACAGTTGACAAATCATTTGTCGAAGCATGACCGAACTTTCAAGAAGAATAAAGAAACGGACAGTTCGAAAAGATTCCTTTGCGAAATTTGCTCGAAAAGTTTTACGCAATCGACGACGTTGATTGCACACCTTCGGGCACATAATGGTATAAAACCGTATGTTTGCGAAGTTTGTTCGCGACCGTTCACAACTAACGCTTATTTAAAAATGCACATGAGAACACATACGCAAGAACGACCGTACGTTTGTCAATATTGTTCACGAGCATTTGCTAGAGCCGATACGCTTGCTAATCATTTGACTTCGCATACAGGCGAGGCTAAATATCATTGTAAGTACTGTCCGAAAAACTTCCGTCGTCTGAAGTCGCTCAAAGAACACGTCTTCATTCATACTGGTCAAAGACCTTACGCCTGTCCAACCTGCGATAGACGGTTTAACAACAACGGAAGTCGATACGCTCACAGTAAAAGGTGTAAACAAACTTTTGTTCAGAATCAAAATCGTGCTCAAACACTAACCGCGCAAGTACAGGCTACGCCTCAAAATCAACAAAGAGTGCTACAACAGACTACTATTGAACAAGGACAAATAGTAAAGGCACAAAATATTAAAACCATTACTATCACTAAACCTGAATCAGTCGCCACTCAACAAACGGTTATGCAACTTCAAGAGATATTAATGCCTTTGATCCTTCCTCTTACAGTCACTCTTACGGATGTCGGTGAGGAAGTAATATTACCAGAAGGAACCAAAATATTTACTACATCATAA
Protein Sequence: MEEVIDQTIATEQTSGECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTREDCTEYVDLLVKAADATTKQENEEEDEEEEKSDITNTVVQPDADSQCQNETRRSKRKLVRRNFETRRDSDEENYFENLNLSSRLKKGQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDTPQKNVYNVTKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDLDNYKDARRHLDNEYRKKVKQKEVETFACDKCAEKFYTKRGLQKHAISHVVLSCSICEEEFDSLEKLRNHRAKHVVEGVLTEQELEMDTEYPINKETCDYETEDKDSIDRNHKMENKSIPGLLETENNLSKKNDRNMETHRHSGIDYSCKMCCQRFAMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFDEEEENIDRINRANVTDNNCSRNKREISSHKRHNHKKELECASCNKRCSSKQLLTKHMEQHVKDEQRVVKSEKQKQSADKKDWQRDYANEEMYHKENRDDDYDSDFESGLDWPMDNHECPKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYVCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTAQVQATPQNQQRVLQQTTIEQGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_00231458; iTF_00219256; iTF_00233372;
80% Identity: -