Basic Information

Insect: Bombus waltoni
Gene Symbol: -
Assembly: GCA_014737395.1
Location: JACXII010000042.1:3606515-3610185[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.11 9 6.8 2.3 1 23 153 175 153 175 0.94

2 18 0.00027 0.022 15.1 1.4 2 23 210 231 209 231 0.98

3 18 1.5 1.2e+02 3.3 0.2 8 23 294 309 293 309 0.91

4 18 0.0015 0.12 12.8 0.3 2 23 313 334 312 334 0.96

5 18 0.3 23 5.5 3.5 1 23 407 430 407 430 0.94

6 18 0.00031 0.024 14.9 0.7 1 21 436 456 436 460 0.92

7 18 0.0016 0.12 12.7 2.0 2 23 539 560 538 560 0.95

8 18 2e-05 0.0016 18.7 4.1 1 23 617 639 617 639 0.97

9 18 0.00021 0.016 15.5 0.7 1 20 644 663 644 665 0.94

10 18 0.035 2.7 8.5 0.6 2 23 676 697 676 697 0.97

11 18 2.1e-05 0.0016 18.6 0.6 2 23 736 757 735 757 0.97

12 18 1.9e-05 0.0015 18.7 1.6 1 23 762 784 762 784 0.95

13 18 0.00011 0.0084 16.4 2.9 1 23 790 812 790 812 0.98

14 18 3.4e-06 0.00026 21.1 0.4 1 23 828 850 828 850 0.95

15 18 2.7e-07 2.1e-05 24.5 0.6 1 23 856 878 856 878 0.99

16 18 3e-05 0.0023 18.1 0.2 1 23 884 906 884 906 0.97

17 18 0.00011 0.0086 16.3 4.1 1 23 912 934 912 934 0.96

18 18 0.0072 0.56 10.6 0.3 1 20 940 959 940 961 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.11	9	6.8	2.3	1	23	153	175	153	175	0.94
2	18	0.00027	0.022	15.1	1.4	2	23	210	231	209	231	0.98
3	18	1.5	1.2e+02	3.3	0.2	8	23	294	309	293	309	0.91
4	18	0.0015	0.12	12.8	0.3	2	23	313	334	312	334	0.96
5	18	0.3	23	5.5	3.5	1	23	407	430	407	430	0.94
6	18	0.00031	0.024	14.9	0.7	1	21	436	456	436	460	0.92
7	18	0.0016	0.12	12.7	2.0	2	23	539	560	538	560	0.95
8	18	2e-05	0.0016	18.7	4.1	1	23	617	639	617	639	0.97
9	18	0.00021	0.016	15.5	0.7	1	20	644	663	644	665	0.94
10	18	0.035	2.7	8.5	0.6	2	23	676	697	676	697	0.97
11	18	2.1e-05	0.0016	18.6	0.6	2	23	736	757	735	757	0.97
12	18	1.9e-05	0.0015	18.7	1.6	1	23	762	784	762	784	0.95
13	18	0.00011	0.0084	16.4	2.9	1	23	790	812	790	812	0.98
14	18	3.4e-06	0.00026	21.1	0.4	1	23	828	850	828	850	0.95
15	18	2.7e-07	2.1e-05	24.5	0.6	1	23	856	878	856	878	0.99
16	18	3e-05	0.0023	18.1	0.2	1	23	884	906	884	906	0.97
17	18	0.00011	0.0086	16.3	4.1	1	23	912	934	912	934	0.96
18	18	0.0072	0.56	10.6	0.3	1	20	940	959	940	961	0.89

Sequence Information

Coding Sequence: ATGGAGGAGGTAATCGATCAAACTATCGCTACAGAGCAGACATCGGAAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACGAAGAAATGTTAAAACACGAAAACGGGGATAACGATTGCCTTGAAAATATTTCAACGGTAGAACACGATTATATATTACAGCAGGAATATCTGTTGGTAAAAGCAGCCGATGCAACGACAAAACAAGACGACGAGGAGGAAGATGAAGAAGAAAAATCGGATATTACGAACACGGACGTTCAGCCAGAGGCAGATTCTCAGTGTCAAAATGAAACGAGAAGAAGCAAACGTAAATCAGTTCGGCGAAATTTTGAAACGAGACGAGATTCCGATGAGGAAAACTATTTTGAAAATTTGAATTTAAGCTCGAGACTGAAAAAAAGTCAATCCTCTGATCAATCGGAAAAAATTTTTCTATGTTATCTGTGCGACAAGGAGTTTTTGTCGAAGAATGTTTTGAAGGAACATATGCATTCTCACGAAGAAGTTCGAAAGGTATTGTCTCTGAAGAAAACACCAGATACACCTCAAAAGAACGTTTATAGTCTTGCAAAGTCTCCTCCATCGGGTAAGAGATCAAACAAGTGCCCGTATTGTGGCAAGCAATACATATATATAACCTCGTTTAGTAAACATTTGAAAAAACATGAAAGGGAGAAAGAAGAGGGGAAGGAAGAATCAATGCCCTTAGAAATATCATTCCACGAAGACGAACATAGTCTAGATTTTGATAATTATAAAGATGCACGTCGGAATTTGGATAACGAGTATCGGAAAAAAGCCAAGCAGAAAGATGTGGGTCCAGAAGAGCATAGAGAGGAAGAAAAAGGGAATGAGAAATTTTATACGAAACGTGGCTTACAAAAACATGCGATTTCGCATGTTGTTCTCAGTTGTAGCATATGCGAAGAAGAATTCGATTCATTGGAAAAATTAAGAAACCATCGCGCGAAACACGTGGTTGAAGGTGTTCTAACTGAACAAGAACTTGAGATGGATACAGAATATGCAATTAATAAGGAAACGTGTAATTACGAGACAGAGGATAAAGATAGCATAGACAGGAATCACAGGACAGAAAACAAATCAATACCTGGATTGCTGGAAACAGAAAATAATTTATCGAAGAAAAATGATAGAAACATGGAGGCCCATCGTCATTCGGGGATTGACTATAGTTGCAAGTTGTGTTGCCAACGATTTGCAATGAAAGAAATGTTGCAGAAACACACAGAACAGCAACACGAACGTGTAAAAACTTACAAGTGCACGCAATGTAACAAAACATTTGGTAATGAACTTACTTTACGCAATCATCTTATAGCCACTAATCATAAAACTTTCCTTCATGGGCAAGAATATGACCCTAATAAACGTATTAAAAGAGTTGCTGCGAGAGCTGCACAAAAAATTATCGATAAAATTAAAACCGAGGATGATTTGGAAGATTTCGATGAGGAAGAGGAGAATATTGATAGAATTAATCGCGCTAATATTACAGATAACAATTATAGTCGGAATAAGCGAGACATATCCTCGCATAAGAGACATAATTATAAGAAAGAATTGGAATGTGCGAGTTGCAATAAAAGATGCAGTTCAAAGCAATTGCTAGCAAAACATATGGAGCAACATGTAAAAGACGAGCAACAACGAGTGGTCAAGTCGGAAAAGCAAAAGCAATCGGCAGATAAGAAAGATTGGCAAAAGGACTACGCTAATGAGGAGATGTACCACAAAGAGAATAGAGATGATGATTATGATTCGGATTTCGAAAGTGGTTTGGATTGGCCGATGGATAATCACGAGTGCCCAAAGTGTAAAAAACGATACAGCACGAAAAAATCATTGTTACGTCATCAATTGTTGCATGAAGAACCGAATTTCGAATGCGATATTTGCAATGTCAAGTTTTACCGCAAAGACAAACTGAAAGCCCATTATGATAAGTGTTCAGAGAAGAACCCCGATCAAGTGAGAAAGTGCAATATTTGTGGAGACACGTTTGAGAACAACGAGATTCTGCGAGAGCATAGATCGAAACATGTTACCGAAGGCATTCTTACGGAAGAGGACTTGAGAGATATCGAACCGCGACCCGAGGAAAAAAAGCCAGGCGAGAAAATTGGTAGGAAGAGAAGGACTGATATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATATACATCGAGAAAAGGGCTTTTACGACATATTCAAGTCCACGAAGGGAAAAAGTATCTGTGTGATATATGTCCAAAAAAATTTTATAGAAGGGAACATTTAAAGATACACGTAGCTAAACATAACATGATTAAACCGTATAAGTGCACACGATGCACAAAGCGTTTCATTAAAGAGGAACAGTTGACAAATCATCTGTCAAAACACGACCGAACTTTCAAGAAGAATAAAGAAACGGACAGTTCGAAAAGATTCCTTTGTGAAATTTGCTCAAAGAGCTTTACACAATCAACGACGTTGATTGCCCACCTTCGAGCGCATAATGGTATAAAACCATACGTTTGCGAGGTTTGTTCGCGACCGTTCACAACTAACGCTTATTTGAAAATGCACATGAGAACGCATACGCAAGAACGGCCGTATATTTGTCAATATTGTTCACGAGCATTTGCTAGAGCCGATACGCTTGCTAATCATTTGACTTCGCATACAGGCGAGGCTAAATATCATTGTAAGTACTGCCCGAAAAACTTCCGTCGTCTAAAGTCGCTCAAAGAACACGTTTTCATTCATACTGGTCAAAGACCTTATGCCTGTCCAACCTGTGATAGACGGTTTAACAACAACGGAAGTCGATACGCTCACAGTAAAAGGTGTAAACAAACTTTTGTTCAGAATCAAAATCGTGCTCAAACGCTAACCGCGCAAGTACAGACTACGCCTCAAAATCAACAAAGAGTGCTACAACAGACTACTCTTGAACAAGGACAAATAGTAAAGGCACAAAATATTAAAACCATTACTATTACTAAACCTGAATCAGTTGCCACTCAACAAACGGTTATGCAACTTCAAGAGATATTAATGCCTTTGATCCTTCCTCTTACGGTCACTCTTACAGATGTCGGTGAGGAAGTAATATTACCAGAAGGAACCAAAATATTTACTACGTCATAA
Protein Sequence: MEEVIDQTIATEQTSEECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTVEHDYILQQEYLLVKAADATTKQDDEEEDEEEKSDITNTDVQPEADSQCQNETRRSKRKSVRRNFETRRDSDEENYFENLNLSSRLKKSQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDTPQKNVYSLAKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDFDNYKDARRNLDNEYRKKAKQKDVGPEEHREEEKGNEKFYTKRGLQKHAISHVVLSCSICEEEFDSLEKLRNHRAKHVVEGVLTEQELEMDTEYAINKETCNYETEDKDSIDRNHRTENKSIPGLLETENNLSKKNDRNMEAHRHSGIDYSCKLCCQRFAMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDDLEDFDEEEENIDRINRANITDNNYSRNKRDISSHKRHNYKKELECASCNKRCSSKQLLAKHMEQHVKDEQQRVVKSEKQKQSADKKDWQKDYANEEMYHKENRDDDYDSDFESGLDWPMDNHECPKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTAQVQTTPQNQQRVLQQTTLEQGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_00219938;
80% Identity: -