Basic Information

Insect: Bombus turneri
Gene Symbol: -
Assembly: GCA_014825825.1
Location: CM026116.1:6472821-6476467[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.12 11 6.8 2.3 1 23 152 174 152 174 0.94

2 18 0.00028 0.025 15.1 1.4 2 23 209 230 208 230 0.98

3 18 0.00056 0.05 14.2 1.0 1 23 293 315 293 315 0.96

4 18 0.0016 0.14 12.7 0.3 2 23 319 340 318 340 0.96

5 18 0.15 14 6.5 3.2 1 23 413 436 413 436 0.94

6 18 0.00032 0.028 14.9 0.7 1 21 442 462 442 466 0.92

7 18 0.0012 0.1 13.2 2.9 2 23 545 566 544 566 0.95

8 18 2.1e-05 0.0019 18.6 4.1 1 23 623 645 623 645 0.97

9 18 0.00021 0.019 15.5 0.7 1 20 650 669 650 671 0.94

10 18 0.036 3.2 8.5 0.6 2 23 682 703 682 703 0.97

11 18 2.1e-05 0.0019 18.6 0.6 2 23 742 763 741 763 0.97

12 18 1.9e-05 0.0017 18.7 1.6 1 23 768 790 768 790 0.95

13 18 0.00011 0.0098 16.4 2.9 1 23 796 818 796 818 0.98

14 18 3.4e-06 0.00031 21.1 0.4 1 23 834 856 834 856 0.95

15 18 2.8e-07 2.5e-05 24.5 0.6 1 23 862 884 862 884 0.99

16 18 1.7e-05 0.0015 18.9 0.2 1 23 890 912 890 912 0.98

17 18 0.00011 0.01 16.3 4.1 1 23 918 940 918 940 0.96

18 18 0.0074 0.66 10.6 0.3 1 20 946 965 946 967 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.12	11	6.8	2.3	1	23	152	174	152	174	0.94
2	18	0.00028	0.025	15.1	1.4	2	23	209	230	208	230	0.98
3	18	0.00056	0.05	14.2	1.0	1	23	293	315	293	315	0.96
4	18	0.0016	0.14	12.7	0.3	2	23	319	340	318	340	0.96
5	18	0.15	14	6.5	3.2	1	23	413	436	413	436	0.94
6	18	0.00032	0.028	14.9	0.7	1	21	442	462	442	466	0.92
7	18	0.0012	0.1	13.2	2.9	2	23	545	566	544	566	0.95
8	18	2.1e-05	0.0019	18.6	4.1	1	23	623	645	623	645	0.97
9	18	0.00021	0.019	15.5	0.7	1	20	650	669	650	671	0.94
10	18	0.036	3.2	8.5	0.6	2	23	682	703	682	703	0.97
11	18	2.1e-05	0.0019	18.6	0.6	2	23	742	763	741	763	0.97
12	18	1.9e-05	0.0017	18.7	1.6	1	23	768	790	768	790	0.95
13	18	0.00011	0.0098	16.4	2.9	1	23	796	818	796	818	0.98
14	18	3.4e-06	0.00031	21.1	0.4	1	23	834	856	834	856	0.95
15	18	2.8e-07	2.5e-05	24.5	0.6	1	23	862	884	862	884	0.99
16	18	1.7e-05	0.0015	18.9	0.2	1	23	890	912	890	912	0.98
17	18	0.00011	0.01	16.3	4.1	1	23	918	940	918	940	0.96
18	18	0.0074	0.66	10.6	0.3	1	20	946	965	946	967	0.89

Sequence Information

Coding Sequence: ATGGAGGAGGTAATCGATCAAACTATCGCTACAGAGCAAACATCGGGAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACGAAGAAATGTTAAAACACGAAAACGGGGATAACGATTGCCTTGAAAATATTTCAACGCGGGAGGATTGCACCGAGTACGTAGATCTATTGGTAAAAGCAGCTGATGCAACGACAAAACAAGAAGATGAGGAGGACGAGGAAGAAGAAGAAAAATCGGATATTACGAACACGCCTATTCAGCCAGATACAGATTCTCAGTGTCAAAATGAAACGAGGAGAAGCAAACGTAAATTAGTTCGGCGAAATTTTGAAACGAGACGAGATTCCGATGAGGAAAACTATTTTGAAAATTTGAATTTAAGCTCGAGACTGAAAAAAGGTCAGTCCTCTGATCAATCGGAAAAAATTTTTCTATGTTATCTGTGCGACAAAGAGTTTTTGTCGAAAAATGTTTTGAAGGAGCATATGCATTCTCACGAAGAAGTTCGAAAGGTATTGTCTCTGAAAAAACCACCGGATACACCGCAAAAGAACGTTTATAATGTTGCAAAGTCTCCTCCATCGGGTAAGAGATCAAACAAGTGCCCGTATTGTGGCAAGCAATACATATATATAACCTCGTTTAGTAAACATTTGAAAAAACATGAAAGGGAGAAAGAAGAGGGCAAGGAAGAATCAATGCCCTTAGAAATATCATTCCACGAAGACGAACATAGTCTAGATCTTGATAATTATAAAGATGCACGTCGGCATTTGGATAACGAGTATCGGAAAAAAGTCAAACAAAAAGAGGTGGAGGAACAGGAGAATCGCAATGTCCGTACAGAAACGTTTGCATGCGACAAGTGCACAGAGAAATTTTATACAAGACGTGGCTTGCAGAAACATGCGATTTCGCATGTTGTTCTCAGTTGCAGCATATGCGAAGAAGAATTCGATTCATTGGAAAAATTAAGAAACCATCGTGCGAAGCATGTAGTTGAAGGTGTTCTAACTGAACAAGAACTTGAGATGGATACAGAATATCCAATTAATAAGGAAACGTGCGATTATGAGACAGAGGATAAAGATAGCATAGACAGGAATCACAGGATGGAAAACAAGTCAATACCAGGATTGCCGGAGACAGAAAATAATTTATCGAAGAAAAATGATAGAAACATGGAGACTCATCGTCATTCGGGGATTGACTATAGTTGCAAGGTGTGTTGCCAACGATTTGCAATGAAAGAAATGCTGCAAAAACACACGGAACAGCAACATGAACGTGTAAAAACTTACAAGTGCACACAATGTAACAAAACATTTGGTAACGAACTTACTTTACGTAATCATCTTATAGCTACTAATCATAAAACTTTTCTTCATGGGCAAGAATATGACCCTAATAAACGTATTAAAAGAGTTGCTGCGAGAGCTGCACAAAAGATTATCGATAAAATTAAAACCGAGGATGGTTTGGAAGATTTCGACGAGGAAGAGGAGAATATCGATAGAATTAATCGCGCTAATGTTACAGATAATAATTATAGTCGGAATAAGCGAGAAATATCCTCGCATAAGAGACATAATCATAAGAAAGAATTGGAATGTGCGAGCTGCAATAAAAGATGCAGTTCAAAGCAATTGTTAACAAAACATATGGAGCAACATGTAAAAGACGAGCAACAACGAGTGGTCAAATCGGAGAAGCAAAAGCAATCGGCAGAAAAGAAAGATTGGCAAAGGGATTATGCTAATGAGGAGATGTACCACAAGGAGAACAGAGATGACGATTATGATTCGGATTTCGAAAGCGGTTTGGATTGGCCAATGGATAATCACGAGTGTCCAAAGTGTAAAAAACGATACAGCACGAAAAAATCATTGCTCCGTCATCAATTGTTGCACGAAGAACCGAATTTCGAATGCGATATTTGCAATGTTAAGTTTTACCGCAAAGACAAACTAAAAGCCCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAATATCTGCGGAGACACGTTTGAGAACAATGAGATTCTGCGAGAACATAGATCAAAACATGTTACCGAAGGCATTCTTACGGAAGAAGACCTGAGAGATATCGAACCGCGACCCGAGGAGAAAAAGCCAGGTGAAAAGATTGGTAGAAAGAGAAGGACTGATATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATATACATCGAGAAAAGGGCTTTTACGACATATTCAAGTCCACGAAGGAAAAAAGTATCTGTGTGATATATGTCCAAAAAAATTTTATAGAAGGGAACATTTAAAGATACACGTAGCTAAACATAACATGATTAAGCCGTATAAGTGCACACGATGCACAAAGCGTTTCATTAAAGAAGAACAGTTGACAAATCACTTGTCAAAGCATGACCGAACTTTCAAGAAGAATAAAGAAACGGACAGCTCGAAAAGATTCCTTTGCGAAATTTGCTCGAAAAGTTTTACGCAATCGACGACGTTGATTGCACACCTTCGAGCACATAATGGTATAAAACCATACGTTTGCGAAGTTTGTTCGCGACCGTTCACAACTAACGCTTATTTGAAAATGCACATGAGAACGCATACGCAAGAACGACCGTATGTTTGTCAATATTGTTCACGAGCATTTGCTAGAGCCGATACGCTTGCTAATCATTTGACTTCGCATACAGGTGAGGCTAAATATCATTGTAAGTACTGTCCGAAAAACTTCCGTCGTCTGAAGTCGCTCAAAGAACACGTCTTCATTCATACTGGTCAAAGACCTTATGCCTGTCCAACCTGCGATAGACGGTTTAACAACAACGGAAGTCGATACGCTCACAGTAAAAGGTGTAAACAAACTTTTGTTCAGAATCAGAATCGTGCTCAAACACTAACCGCGCAAGTACAGGCTACACCTCAAAATCAACAAAGAGTGCTGCAACAGACTACTCTTGAACAAGGACAAATAGTAAAGGCACAAAATATTAAAACCATTACTATCACTAAACCTGAATCAGTTGCCACTCAACAAACGGTTATGCAGCTTCAAGAGATATTAATGCCTTTGATCCTTCCTCTTACAGTCACTCTTACGGATGTGGGTGAGGAAGTAATATTACCAGAAGGAACCAAAATATTTACTACATCATAA
Protein Sequence: MEEVIDQTIATEQTSGECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTREDCTEYVDLLVKAADATTKQEDEEDEEEEEKSDITNTPIQPDTDSQCQNETRRSKRKLVRRNFETRRDSDEENYFENLNLSSRLKKGQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKPPDTPQKNVYNVAKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDLDNYKDARRHLDNEYRKKVKQKEVEEQENRNVRTETFACDKCTEKFYTRRGLQKHAISHVVLSCSICEEEFDSLEKLRNHRAKHVVEGVLTEQELEMDTEYPINKETCDYETEDKDSIDRNHRMENKSIPGLPETENNLSKKNDRNMETHRHSGIDYSCKVCCQRFAMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFDEEEENIDRINRANVTDNNYSRNKREISSHKRHNHKKELECASCNKRCSSKQLLTKHMEQHVKDEQQRVVKSEKQKQSAEKKDWQRDYANEEMYHKENRDDDYDSDFESGLDWPMDNHECPKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYVCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTAQVQATPQNQQRVLQQTTLEQGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_00219938;
80% Identity: -