Beup015497.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Boloria euphrosyne
Gene Symbol
ham
Assembly
GCA_951802675.2
Location
OX637885.1:5150825-5185079[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.18 18 6.9 0.0 2 23 304 326 304 326 0.94
2 9 0.0011 0.11 13.9 1.1 1 23 333 356 333 356 0.93
3 9 2e-08 2e-06 28.7 0.1 1 23 362 385 362 385 0.96
4 9 1.7e-06 0.00017 22.7 1.7 1 23 391 413 391 413 0.95
5 9 5.2e-05 0.0051 18.0 5.9 1 23 419 441 419 441 0.99
6 9 0.00066 0.066 14.5 0.2 2 21 449 468 448 469 0.94
7 9 1.4e-08 1.4e-06 29.2 0.7 1 23 854 876 854 876 0.98
8 9 5.2e-07 5.1e-05 24.3 1.7 1 23 882 905 882 905 0.97
9 9 3e-05 0.0029 18.8 4.3 1 23 911 933 911 933 0.98

Sequence Information

Coding Sequence
ATGATTTTACATAAATTGATTGCGACAGCGGCCGACAGCCAAGAATCAGGCAGTCCTCCACCAAGTCCGACTGACTCTGCAGCATCAGAATCAGCGCCCACCTTAGTTCATATCAAGCAGGAAACTATGGCCCCTGGAACAGACATGAAGGAATATTATAGTGCTTTAGACTTTGGGCTTTCTGACCCGTACTTGCCACCGTCATATGATTACCAACGAAACTACTTATCTAGGCCACTAGATTTACCAAACCAAAGGTACTTAGATGCAAAGAGTCCAGAAAGGAATGAGGATGATTTCAAGGATGATATTGAAAAGTTAGATTTCAATTTACCATCAGAATTGGTGCTGAAATCGGGTGGTATATTTGCGAGAGCCAATATTCCTGTTGGAACTAAATATGGACCTTTCAACGGCAAATGGGAAACACAACCATTGGATAGAAGATACGCATGGGaggtTCTTGGGAAAAATGGCGTCCGAGGATGGTTGGATGGCACCACGGAGAAGACTAACTGGCTCAAATACGTTCGATCGACGACATACCCTCACGATGTCAACGTACAACATTTGCTGCTCGCTGGACaaATTTGGTATAAAGTGACTCGGGACATCCCCCCGGGGCAGGAGTTGCTTTTAGGGCCGCGTACTCCGCTGCCTTTACAAGATGTCTTCACTGCTAACAGTGATTCAAAACGATATGGCATCCTGTGCAACGGTAAAGGTCCGTTCGCACCGCGGGGAATAACGGCGGCGACGCACCTGACGCGTTCAGATCTATGCCCCGAGCGGCAAGGGCTTATTGCTTTAACGTTAGATGTAATCTGCATTTgTCGCGACAGCTCTAATATAAGCTCGTCCAACTCGCAGACTCTGACGGAAGACGAAGAGAGAGAAGACACTGAGCCCCGCTGTTCTTTTTGCGACGCGCCTTATCCTAATATTGATgcACTAGATCGTCACTTAATACAAGCGCACGCGCAACCTGCAGCTGCGTTTCACTGTGAACTTTGCAATCGCGCGTATAGCTCCCGAGCCCTGCTGCTCAGACATCGTGCGTTAACTCACActgatataagaaaatatccTTGTGAAAACTGTCcaaagGTATTTACCGATCCTTCCAACCTCCAGCGTCACATCCGCGCGCAGCACGTCGGCGCGCGCTCGCACGCGTGCCCCGAGTGCGGGAAGACCTTCGCCACCTCCTCCGGCCTCAAGCAGCACACCCACATACACTCCAGCGTCAAGCCGTTCCAGTGCAAGGTGTGCTATAAAGCCTACACTCAATTTTCGAACTTGTGCCGCCACAAACGAATGCACGTGGCGTGTAGGGCACTCGTCGAATGCGTGAAATGCGGCCAATCTTTCCCGTCATACGCGTCTCTCACAAAGCATAAGAGATTTTGCGACACAGCGACTGCAAACGTGAATCTCCGAGGACAACTGCCACAAGGATTGTCTCAAATACCATCTTTACCAAACGTCATGAATACCCCCAATAATACAAATCCGTTCCCAATGTATAGAGGCCCAGGTTTGCCTCTACCCTATAACACATTCGCACATTATCCTGCGATTTTCTCTGCGGCAGCAGCAGCTTGCCCACCAGAATTCTTAAGTCCtctattatttaatgtacaaggAGCTAGACTTGCAATGGAACACGATATGGCAATGAATGCCAATCTTGTAGCAAAACAACAGGAGGGACGTATGTCTGTCAAGAGCATGGACAGCTCGACTTCGTTAGACGATATGAAGAAGAAGGATATAGATATTGAAAAGAGAGATCATGATGACAGAGTGACACCAAAACAACAGAATTTGTATGTGAAACAATCACCACCGTCCGCTGAAGAAGCATCATCAAAGCAGCGACCGTCACCGGTCATGCCAATGTCAACTGCGATCCCACCGTTTAATTTCACGAGAGATGAGAAGCAAAACTCTCCCTTCAATCTATCAATGAAACATAATAGTGATTTTCTGGGAAGCAAATCCGTTTCGCCACTGCCCAAAGATTTGACTAAAAACTTGGACGAAATTGATAAGAAGTCCAGATATTCAGATATAGATGAAGATACACGGAAAGAACAAAACGATCAGCCACTCGATTTATCTGTCACACGGAAGCAAGATAAAGATTCTGAAGTGGAAAATGACGATCATTCCTTTCGTAATTCGTCAGTTAAGTCATATTCACCGCCTGAAAGTCCCATCGATCGAGAGAATAAGACTCCTGAAAATGAGACAACTAATGTCGATGTGGAAGCAGTTGAAATAGAAGATTCTCCACAGCCATTAGTTTCGCCCCCAATGGCATTTCCGATGCCAGTACATCCTCAACACAACAATATAATAGATGCAATGTACCGACCTCGTTTCCCACAGTTTCCTACTTCAGACTCGATTCTAAACTCATCACATTCCCCGTATGTTCCGAGTCCGTTCAATTTTTTATCCCCTCTTCTCGGTACTGATGGCCCTGATCGACAAACAAACGCATACGCGAAGTTTCGAGAACTTAGCTCAGTTTCAGGCAAACTTAGGGATCGCTATGCTTGCAAATTCTGTGGCAAAGTGTTCCCAAGAAGCGCGAATTTAACGCGTCATTTACGAACTCACACAGGAGAACAGCCTTACAAATGCAAATATTGCGAGCGTTCTTTCTCTATTTCGTCGAACTTACAACGCCATGTACGGAATATTCACAATAAAGAAAGACCATTTCGATGCTCGCTGTGTGACAGATGTTTCGGACAACAAACAAACCTTGATCGACATTTGAAGAAGCACGAAGCTGAAGGCGGGGATTCCCCGAGTTCAGCAGATACTGAGCAGGATGCATGCTTCGATGACATTCGTTCGTTTATGGGGAAGGTAACTTGTTCCCCAAGCGCTGGATCGCCTTCGGGTAATTCCCCCCATCCCCCACACTCTCACCCCCATCGACCACCACTCGCTATATCCACATAG
Protein Sequence
MILHKLIATAADSQESGSPPPSPTDSAASESAPTLVHIKQETMAPGTDMKEYYSALDFGLSDPYLPPSYDYQRNYLSRPLDLPNQRYLDAKSPERNEDDFKDDIEKLDFNLPSELVLKSGGIFARANIPVGTKYGPFNGKWETQPLDRRYAWEVLGKNGVRGWLDGTTEKTNWLKYVRSTTYPHDVNVQHLLLAGQIWYKVTRDIPPGQELLLGPRTPLPLQDVFTANSDSKRYGILCNGKGPFAPRGITAATHLTRSDLCPERQGLIALTLDVICICRDSSNISSSNSQTLTEDEEREDTEPRCSFCDAPYPNIDALDRHLIQAHAQPAAAFHCELCNRAYSSRALLLRHRALTHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCYKAYTQFSNLCRHKRMHVACRALVECVKCGQSFPSYASLTKHKRFCDTATANVNLRGQLPQGLSQIPSLPNVMNTPNNTNPFPMYRGPGLPLPYNTFAHYPAIFSAAAAACPPEFLSPLLFNVQGARLAMEHDMAMNANLVAKQQEGRMSVKSMDSSTSLDDMKKKDIDIEKRDHDDRVTPKQQNLYVKQSPPSAEEASSKQRPSPVMPMSTAIPPFNFTRDEKQNSPFNLSMKHNSDFLGSKSVSPLPKDLTKNLDEIDKKSRYSDIDEDTRKEQNDQPLDLSVTRKQDKDSEVENDDHSFRNSSVKSYSPPESPIDRENKTPENETTNVDVEAVEIEDSPQPLVSPPMAFPMPVHPQHNNIIDAMYRPRFPQFPTSDSILNSSHSPYVPSPFNFLSPLLGTDGPDRQTNAYAKFRELSSVSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCSLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEQDACFDDIRSFMGKVTCSPSAGSPSGNSPHPPHSHPHRPPLAIST