Basic Information

Insect: Brenthis hecate
Gene Symbol: ham
Assembly: GCA_951806755.1
Location: OX638279.1:1522266-1545389[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.14 11 7.2 0.0 2 23 128 150 128 150 0.94

2 9 0.00082 0.066 14.2 1.1 1 23 157 180 157 180 0.93

3 9 1.5e-08 1.2e-06 29.1 0.1 1 23 186 209 186 209 0.96

4 9 1.3e-06 0.0001 23.0 1.7 1 23 215 237 215 237 0.95

5 9 4e-05 0.0032 18.3 5.9 1 23 243 265 243 265 0.99

6 9 0.00051 0.041 14.8 0.2 2 21 273 292 272 293 0.94

7 9 1.1e-08 8.9e-07 29.5 0.7 1 23 673 695 673 695 0.98

8 9 4e-07 3.2e-05 24.6 1.7 1 23 701 724 701 724 0.97

9 9 4.4e-06 0.00035 21.3 3.3 1 23 730 752 730 752 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.14	11	7.2	0.0	2	23	128	150	128	150	0.94
2	9	0.00082	0.066	14.2	1.1	1	23	157	180	157	180	0.93
3	9	1.5e-08	1.2e-06	29.1	0.1	1	23	186	209	186	209	0.96
4	9	1.3e-06	0.0001	23.0	1.7	1	23	215	237	215	237	0.95
5	9	4e-05	0.0032	18.3	5.9	1	23	243	265	243	265	0.99
6	9	0.00051	0.041	14.8	0.2	2	21	273	292	272	293	0.94
7	9	1.1e-08	8.9e-07	29.5	0.7	1	23	673	695	673	695	0.98
8	9	4e-07	3.2e-05	24.6	1.7	1	23	701	724	701	724	0.97
9	9	4.4e-06	0.00035	21.3	3.3	1	23	730	752	730	752	0.98

Sequence Information

Coding Sequence: ATGATAAATGTCCAAGCTGACGATTTGACGCGGACTAATAGTGCCATCTATTGCGAAGCCGCGGTGTCCGGTAATgtTCTTGGAAAAAATGGTGTCCGAGGATGGTTGGATGGCACCACGGAGAAGTCCAACTGGCTAAAATACGTTCGATCAACGACTTACCCTCACGATGTGAATGTTCAACATTTGCTGCTCGCTGGACAAattTGGTATAAAGTGACTCGGGACATCCCCAAGGGGCAGGTTTTGCTTTTAGGACCGCGTACACCGCTGCCTTTACAAGATGTCTTCACTGCTAACAGTGGTCGCGACAGCGCTACTTTAAGCTCGTCCAACTCGCAGCCTCTCACAGAAGACGAAGAGAGAGAAGATACTGAACCCCGTTGTTCTTTTTGCGACGCGCCGTACCCTAACATTGATGCacTAGACCGTCACTTAATACAAGCGCACGCGCAACCTGCATCTGCATTTCATTGTGAACTTTGCAATCGCGCGTATAGCTCCCGAGCTCTACTGCTCAGACATCGCGCGTTAACGCATACTGATATTAGAAAATATCCTTGTGAAAACTGTCCAAagGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGCGCGCAGCACGTCGGCGCGCGCTCGCACGCGTGCCCCGAGTGCGGGAAGACCTTCGCCACCTCCTCAGGCCTTAAGCAGCACACCCACATACACTCCAGCGTCAAGCCGTTCCAGTGCAAGGTGTGCTATAAAGCCTACACCCAATTTTCGAACTTGTGCCGCCACAAACGAATGCACGTGGCGTGTAGAGCACTCGTCGAATGCGTGAAATGCGGCCAATCCTTCCCGTCGTACGCGTCTCTTACAAAGCATAAGAGATTTTGTGACACTGCGACCGCTAACGTGAATCTTCGTGGGCAGCTGCCTCAAGGATTGTCTCAAATACCATCTTTACCAAACGTCATGAATACCCCCAATAATACAAATCCCTTTCCAATGTATAGAGGCCCAGGCTTGCCTCTACCTTATAATACTTTCGCTCACTATCCTGCGATTTTCTCCGCAGCAGCAGCAGCTTGCCCACCAGAATTCTTAAGTCCTCTGTTATTTAACGTACAAGGAGCGAGACTTGCAATGGAACACGATATGGCAATGAATGCCAATCTTGTAGCAAAACAACAGGAGGGACGTATGTCCGTCAAGAGCATGGATAGCTCGACTTCGTTAGACGATATGAAGAAAAAGGACATAGATGTTGAAAAGGGTGATAATGATGATAGAGTGACTCCAAAACAACAGAATTTGTATGTGAAACAATCGCCACCATCCGCTGAAGAAGCTTCATCAAAACAGCGACCGTCTCCAGTCATGCCAATGTCGACTGCAGTCCCACCATTTAATTTCACGAGGGATGAGAAGCAAAATTCTCCTTTTAATCTATCAATGAAACATAATGGTGATGTACTAGGAAACCTGCCCAAAGATTTGACTAAAAACTTGGACGAAATTGATAAGAAGTCCAGATATTCTGATATAGATGAAGATACACGGAAAGAACAAAACGATCAACCGCTCGATTTATCTGTTACACGGAAGCAAGATAAAGAGTCTGATATGGAAAATGACGATCATTCCTTTCGTAATTCGTCAGTTAAGTCATATTCGCCACCTGAAAGTCCCATGGATCGAGAGAATAAAACTCCTGAAAATGAGACAGCCAATGTCGATGTGGAAGCAGTAGAAATAGAAGATTCTCCACAGCCATTAGTTTCGCCCCCAATGGCATTCCCGATGCCAGTACATCCTcaacacaataatataatagatgcGATGTACCGACCTCGCTTCCCACAGTTCCATACTTCAGACTCGATTCTAAGCTCTTCACATTCCCCGTATGTCCCGAGCCCGTTCAATTTTTTATCCCCTCTTCTCGGTACTGATGGCCCCGATCGGCAAACAAACGCGTACGCAAAGTTTCGAGAACTTAGCTCAGTTTCGGGGAAACTTAGGGATCGCTATGCTTGCAAATTCTGTGGCAAAGTGTTCCCAAGAAGCGCAAATTTAACGCGTCATCTACGTACTCACACCGGGGAGCAGCCTTACAAATGCAAATATTGCGAACGTTCTTTCTCCATTTCATCGAACCTACAACGTCATGTACGGAACATTCACAATAAAGAAAGACCATTTCGATGCCCGCTGTGTGACAGATGTTTCGGGCAACAAACAAACCTAGATCGGCATTTGAAGAAACACGAAGCTGAAGGCGGAGATTCCCCGAGTTCGGCAGATACTGAACAGGACGCGTGCTTCGATGACATCCGTTCTTTTATGGGAAAGGTAACATGTTCCCCAAGCGCTGGATCGCCTTCGGGTAATTCCCCTCATCccccccattctcacccccatCGACCCCCTCTCGCTATATCCACATAG
Protein Sequence: MINVQADDLTRTNSAIYCEAAVSGNVLGKNGVRGWLDGTTEKSNWLKYVRSTTYPHDVNVQHLLLAGQIWYKVTRDIPKGQVLLLGPRTPLPLQDVFTANSGRDSATLSSSNSQPLTEDEEREDTEPRCSFCDAPYPNIDALDRHLIQAHAQPASAFHCELCNRAYSSRALLLRHRALTHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCYKAYTQFSNLCRHKRMHVACRALVECVKCGQSFPSYASLTKHKRFCDTATANVNLRGQLPQGLSQIPSLPNVMNTPNNTNPFPMYRGPGLPLPYNTFAHYPAIFSAAAAACPPEFLSPLLFNVQGARLAMEHDMAMNANLVAKQQEGRMSVKSMDSSTSLDDMKKKDIDVEKGDNDDRVTPKQQNLYVKQSPPSAEEASSKQRPSPVMPMSTAVPPFNFTRDEKQNSPFNLSMKHNGDVLGNLPKDLTKNLDEIDKKSRYSDIDEDTRKEQNDQPLDLSVTRKQDKESDMENDDHSFRNSSVKSYSPPESPMDRENKTPENETANVDVEAVEIEDSPQPLVSPPMAFPMPVHPQHNNIIDAMYRPRFPQFHTSDSILSSSHSPYVPSPFNFLSPLLGTDGPDRQTNAYAKFRELSSVSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEQDACFDDIRSFMGKVTCSPSAGSPSGNSPHPPHSHPHRPPLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00212799;
90% Identity: iTF_00160049;
80% Identity: -