Basic Information

Insect: Heliconius congener
Gene Symbol: ham
Assembly: GCA_018230605.1
Location: DWAO01014873.1:1918-5712[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00056 0.063 14.8 1.2 1 23 59 82 59 82 0.93

2 8 1.4e-08 1.6e-06 29.3 0.1 1 23 88 111 88 111 0.96

3 8 1.2e-06 0.00013 23.2 1.7 1 23 117 139 117 139 0.95

4 8 3.7e-05 0.0041 18.5 5.9 1 23 145 167 145 167 0.99

5 8 0.00048 0.053 15.0 0.2 2 21 175 194 174 195 0.94

6 8 1e-08 1.1e-06 29.7 0.7 1 23 580 602 580 602 0.98

7 8 3.7e-07 4.1e-05 24.8 1.7 1 23 608 631 608 631 0.97

8 8 2e-05 0.0022 19.3 4.5 1 23 637 659 637 659 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00056	0.063	14.8	1.2	1	23	59	82	59	82	0.93
2	8	1.4e-08	1.6e-06	29.3	0.1	1	23	88	111	88	111	0.96
3	8	1.2e-06	0.00013	23.2	1.7	1	23	117	139	117	139	0.95
4	8	3.7e-05	0.0041	18.5	5.9	1	23	145	167	145	167	0.99
5	8	0.00048	0.053	15.0	0.2	2	21	175	194	174	195	0.94
6	8	1e-08	1.1e-06	29.7	0.7	1	23	580	602	580	602	0.98
7	8	3.7e-07	4.1e-05	24.8	1.7	1	23	608	631	608	631	0.97
8	8	2e-05	0.0022	19.3	4.5	1	23	637	659	637	659	0.98

Sequence Information

Coding Sequence: ATGTCGAACGGCCTTTCTCTAAAGCtaccaataaatatatgttcataCAGCCAGCAATGTAATTTGGTTAATCAAAATGTACCTTATGTAATAGAGAACAGGTGTAACGTTTCTAGTAGCCAGAGGCGATTAGATCGTCACTTAATACAAGCGCACGCGCAGCCAGCTTCAGCGTTCCACTGTGAGCTTTGCAATCGCGCTTATAGTACCCGAGCCCTGCTGCTGCGGCATCGTGCCCTAACGCACACTGATATTAGGAAATACCCTTGCGAAAATTGTCCAAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGCGCGCAGCACGTCGGCGCCCGCAGCCACGCCTGCCCCGAGTGCGGCAAGACCTTCGCCACGTCCTCGGGCCTCAAGCAGCACACGCACATACACTCCAGTGTGAAGCCATTCCAGTGTAAAGTTTGCTATAAAGCTTACacacaattttcaaatttgtgTCGCCACAAGCGAATGCACGTGGCGTGTAGAGCGCTAGTTGAATGCGTCAAATGCGGTCAGTCTTTTCCATCATATGCCTCTTTGACGAAACATAAGAGATTCTGTGATACCGCCACAGCCAGTGTAAATTTACGTGGTCAATTGCCCCAGGGTATTCCTCAAATACCGCCTCTACCAAACGTTATGAATACTCCAAACAATACAAATCCATTTCCAATGTACAGAGGACCCGGATTACCTCTACCTTATAACACCTTTGCACATTATCCTGCTATATTCTCAGCAGCAGCCGCAGCGTGTCCACCAGAATTTCTTAGCCCTCTTCTCTTTAACGTTCAAGGAGCTAGACTTGCTATGGAACACGACATGGCAATGAACGCTAATTTAGCAGCCAAACAACAAGAAGGACGAATGTCTGTTAAAAGTATTGATAGTTCAACATCTTTAGATGATATTAAGAAGAAGGATTTAGATATAGAAAAAAGTGATGGAGATAGAGTGACTCCAAAACAATCGAACTTGTATGTAAAACAATCTCCACCATCAGCCGAAGAAGCTTCTTCGAAACAAAGGCCTTCTCCAGTTATGCCAATGTCGACTGCGGTCCCACCCTATAATTACGTTAGGgatgaaatgaaacaaaattctCCCTTCAATCTTTCAATGAAACACAATGACATATTAGGGAACAAGTCTGTATCACCAACACTATCCAAAGATCTGTCTAAAAATTTAGATGATATCGAgaaaaaatgtagatattcAGATATAGAGGAAGACACAGCGAAAGATCAAAATGACCAACCTCTTGATTTATCTGTCTCACGGAAACACGATAAAGAGTCTGATATGGAAAATGACGATCATTCCCTTCGTAACTCCTCAGTAAAATCATATTCGCCTCCTGAAAGTCCAATTGATCGGGAGAACAAGACTCCTGAAAACGAGACCACTAATGTTGATGTGGAAGCAGTTGAAATTGAAGATTCTCCGCAACCGTTAGTGTCGCCTCCAATTGCGTTCCCGATGCCGGTCCATCcacaacataataatataatcgacGCAATGTACCGGCCACGATTCCCCCAGTTTCACACATCAGAATCAATTCTTAGCTCGTCGCATTCCCCGTACGTTCCTAgtccatttaattttttatcccCTCTTCTCGGCACTGATGGACCAGATAGGCAAACAAATGCATATGCAAAGTTTCGGGAACTTAGTTCAGCTTCTGGGAAGCTCCGTGATCGTTACGCTTGTAAGTTTTGTGGAAAAGTATTCCCGAGGAGCGCAAACTTGACACGTCATCTTCGGACGCACACTGGAGAGCAACCTTACAAATGCAAGTATTGTGAGCGCTCTTTCTCTATATCATCCAATTTACAACGTCATGTACGGAACATTCATAATAAGGAGCGGCCCTTTCGGTGTACCCTGTGTGACAGATGCTTCGGCCAACAAACCAATCTTGATCGACATTTGAAGAAACATGATACTGAAGGCGGGGACTCCCCGAGTTCAGCTGACACTGAACAAGACACGCGCTTCGATGATATTCGATCGTTCATGGAAAAAGTAACATGCTCTCCCAGTGCTGGATCACCTTCAGGGAATTCCCCTCATCCACCTCACCCTCACCCCCATCGACCGCCACTCGCTATATCTACATAG
Protein Sequence: MSNGLSLKLPINICSYSQQCNLVNQNVPYVIENRCNVSSSQRRLDRHLIQAHAQPASAFHCELCNRAYSTRALLLRHRALTHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCYKAYTQFSNLCRHKRMHVACRALVECVKCGQSFPSYASLTKHKRFCDTATASVNLRGQLPQGIPQIPPLPNVMNTPNNTNPFPMYRGPGLPLPYNTFAHYPAIFSAAAAACPPEFLSPLLFNVQGARLAMEHDMAMNANLAAKQQEGRMSVKSIDSSTSLDDIKKKDLDIEKSDGDRVTPKQSNLYVKQSPPSAEEASSKQRPSPVMPMSTAVPPYNYVRDEMKQNSPFNLSMKHNDILGNKSVSPTLSKDLSKNLDDIEKKCRYSDIEEDTAKDQNDQPLDLSVSRKHDKESDMENDDHSLRNSSVKSYSPPESPIDRENKTPENETTNVDVEAVEIEDSPQPLVSPPIAFPMPVHPQHNNIIDAMYRPRFPQFHTSESILSSSHSPYVPSPFNFLSPLLGTDGPDRQTNAYAKFRELSSASGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCTLCDRCFGQQTNLDRHLKKHDTEGGDSPSSADTEQDTRFDDIRSFMEKVTCSPSAGSPSGNSPHPPHPHPHRPPLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00212799;
90% Identity: iTF_00160049;
80% Identity: -