Basic Information

Insect: Heliconius numata
Gene Symbol: ham
Assembly: GCA_016802625.1
Location: JAEBDU010000066.1:15861-32469[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.13 13 7.2 0.0 2 23 128 150 128 150 0.94

2 8 0.00057 0.058 14.6 1.2 1 23 157 180 157 180 0.93

3 8 1.2e-06 0.00012 23.0 1.7 1 23 206 228 206 228 0.95

4 8 3.8e-05 0.0038 18.3 5.9 1 23 234 256 234 256 0.99

5 8 0.00049 0.049 14.8 0.2 2 21 264 283 263 284 0.94

6 8 1.1e-08 1.1e-06 29.5 0.7 1 23 669 691 669 691 0.98

7 8 3.8e-07 3.8e-05 24.6 1.7 1 23 697 720 697 720 0.97

8 8 2.1e-05 0.0021 19.1 4.5 1 23 726 748 726 748 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.13	13	7.2	0.0	2	23	128	150	128	150	0.94
2	8	0.00057	0.058	14.6	1.2	1	23	157	180	157	180	0.93
3	8	1.2e-06	0.00012	23.0	1.7	1	23	206	228	206	228	0.95
4	8	3.8e-05	0.0038	18.3	5.9	1	23	234	256	234	256	0.99
5	8	0.00049	0.049	14.8	0.2	2	21	264	283	263	284	0.94
6	8	1.1e-08	1.1e-06	29.5	0.7	1	23	669	691	669	691	0.98
7	8	3.8e-07	3.8e-05	24.6	1.7	1	23	697	720	697	720	0.97
8	8	2.1e-05	0.0021	19.1	4.5	1	23	726	748	726	748	0.98

Sequence Information

Coding Sequence: ATGATAAATGTCCAAGCTGACGATCTGACACGGACTAATAGTGCCATCTATCGTGAGGCCAACGCAACCGCTGGTGTTCTTGGAAAAAATGGCGTTCGTGGATGGCTTGATGGAACAACAGAGAAGTCAAACTGGCTAAAGTTCGTCAGGTCCACCACGTATCCCCATGACGTGAACGTTCAACATTTGCTGATGGCAGGACAGATTTGGTACAAAGTGACGCGTGATATTCCGTCGGGACAAGAGTTGCTGTTAGGTCCACGGACGCCGCTGCCGTTGCAAGATGTTTTCACAGCTTCTAGTGGTCGTGACAGCTCTAACTTGAGCTCATCAAACTCCCAAACCCATACCGAAGACGAAGAACGAGAAGACACAGAACCACGTTGCTCCTTCTGCGACGCGCCGTACCCCAACATTGATGCATTAGATCGTCATTTAATACAAGCGCACGCGCAACCAGCTTCGGCGTTCCACTGTGAGCTTTGCAATCGCGCCTATAGTACCCGAGCACTGCTGCTGAGGCACCGTGCACTAACGCACACCGATATTAGGAAATATCCTTGCGAAAATTGTCCAAAGCGCCACATCCGCGCGCAGCACGTCGGCGCCCGCAGCCACGCCTGCCCCGAGTGCGGCAAGACCTTCGCCACGTCCTCCGGCCTCAAGCAGCACACCCACATACACTCCAGCGTGAAGCCGTTCCAGTGTAAAGTTTGCTACAAAGCTTATACACAATTTTCAAATTTGTGTCGCCACAAGCGAATGCACGTGGCGTGTAGAGCGTTAGTGGAATGCGTCAAATGCGGTCAGTCTTTCCCATCGTATGCCTCTTTGACGAAGCATAAGAGATTCTGTGATACTGCCACAGCTAGCGTGAATTTACGTGGCCAATTGCCCCAAGGTCTTCCTCAAATACCGCCTCTACCAAACGTCATGAATACTCCAAACAATACAAATCCATTTCCAATGTACAGAGGACCCGGATTACCTCTGCCTTATAACACCTTCGCACATTATCCTGCTATATTCTCAGCAGCAGCCGCAGCGTGTCCACCAGAATTTCTTAGCCCTCTTCTTTTCAACGTTCAAGGAGCTAGACTTGCTATGGAGCATGATATGGCAATGAACGCTAATTTAGTAGCCAAACAACAAGAAGGACGTATGTCTGTTAAAAGTATTGATAGCTCAACATCTTTGGATGATATAAAGAAGAAAGATTTAGATATTGAAAAAAGTGATGGAGACAGAGTGACTCCGAAACAATCGAGTTTGTATGTAAAACAATCTCCACCATCTGCCGAAGAAGCTTCCTCAAAACAACGGCCTTCTCCAGTTATGCCAATGTCGACTGCAGTCCCACCCTATAGTTATGTTAGGGATGAAATGAAACAAAATTCTCCCTTCAATCTTTCAATGAAACATAATGACATATTAGGGAGCAAGTCTGTATCACCTGCACTGTCGAAAGATATATCTAAAAATTTAGACGATATCGAGAAAAAATGTAGATATTCAGATATAGAGGAAGACGCAGTAAAAGATCAGAATGACCAACCGCTTGATTTATCTGTTTCACGAAAACACGACAAAGATTCTGACATGGAAAATGACGATCATTCCCTTCGTAACTCATCAGTAAAATCATATTCGCCACCTGAAAGTCCAATTGATCGGGACAACAAGACCCCTGAGAACGAGACAACTAATGTTGACGTGGAAGCAGTTGAAATTGAAGATTCTCCGCAACCGTTAGTATCGCCTCCAATTGCGTTCCCGATGCCGGTACATCCACAACATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGAATCAATTCTTAGCTCGTCGCATTCCCCATACGTTCCTAGTCCATTTAATTTTTTATCCCCTCTTCTCGGCACTGATGGACCAGATCGGCAGACAAATGCATACGCAAAGTTTCGGGAACTCAGTTCAGCTTCGGGAAAGCTTCGCGATCGTTACGCTTGCAAGTTTTGTGGTAAAGTATTCCCGAGGAGCGCAAACTTGACACGTCATCTTCGGACGCACACTGGAGAGCAACCATACAAGTGCAAGTATTGCGAGCGCTCTTTCTCAATATCATCCAATTTACAACGTCATGTACGAAACATTCATAACAAGGAGCGGCCCTTTCGGTGTACCCTGTGCGACAGATGCTTCGGCCAACAAACCAATCTTGATCGACATTTGAAGAAACATGACACTGAGGGCGGGGACTCCCCGAGTTCAGCTGATACTGAACAAGACACGCGCTTCGATGATATTCGATCATTCATGGAAAAAGTGACTTGCTCTCCCAGTGCTGGATCACCGTCAGGGAATTCCCCTCATCCACCACACCCTCACCCTCACCGACCTCCACTAGCTATATCTACATAG
Protein Sequence: MINVQADDLTRTNSAIYREANATAGVLGKNGVRGWLDGTTEKSNWLKFVRSTTYPHDVNVQHLLMAGQIWYKVTRDIPSGQELLLGPRTPLPLQDVFTASSGRDSSNLSSSNSQTHTEDEEREDTEPRCSFCDAPYPNIDALDRHLIQAHAQPASAFHCELCNRAYSTRALLLRHRALTHTDIRKYPCENCPKRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCYKAYTQFSNLCRHKRMHVACRALVECVKCGQSFPSYASLTKHKRFCDTATASVNLRGQLPQGLPQIPPLPNVMNTPNNTNPFPMYRGPGLPLPYNTFAHYPAIFSAAAAACPPEFLSPLLFNVQGARLAMEHDMAMNANLVAKQQEGRMSVKSIDSSTSLDDIKKKDLDIEKSDGDRVTPKQSSLYVKQSPPSAEEASSKQRPSPVMPMSTAVPPYSYVRDEMKQNSPFNLSMKHNDILGSKSVSPALSKDISKNLDDIEKKCRYSDIEEDAVKDQNDQPLDLSVSRKHDKDSDMENDDHSLRNSSVKSYSPPESPIDRDNKTPENETTNVDVEAVEIEDSPQPLVSPPIAFPMPVHPQHXXXXXXXXXXXXXXXXXSESILSSSHSPYVPSPFNFLSPLLGTDGPDRQTNAYAKFRELSSASGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCTLCDRCFGQQTNLDRHLKKHDTEGGDSPSSADTEQDTRFDDIRSFMEKVTCSPSAGSPSGNSPHPPHPHPHRPPLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00212799;
90% Identity: iTF_00160049;
80% Identity: -