Basic Information

Insect: Heliconius nattereri
Gene Symbol: ham
Assembly: GCA_013403645.1
Location: JAAIXI010000212.1:836841-853482[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.12 8.4 7.2 0.0 2 23 128 150 128 150 0.94

2 9 0.00055 0.037 14.6 1.2 1 23 157 180 157 180 0.93

3 9 1.4e-08 9.4e-07 29.0 0.1 1 23 186 209 186 209 0.96

4 9 1.2e-06 8e-05 23.0 1.7 1 23 215 237 215 237 0.95

5 9 3.6e-05 0.0024 18.3 5.9 1 23 243 265 243 265 0.99

6 9 0.00046 0.032 14.8 0.2 2 21 273 292 272 293 0.94

7 9 1e-08 6.8e-07 29.5 0.7 1 23 679 701 679 701 0.98

8 9 3.6e-07 2.5e-05 24.6 1.7 1 23 707 730 707 730 0.97

9 9 2e-05 0.0013 19.1 4.5 1 23 736 758 736 758 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.12	8.4	7.2	0.0	2	23	128	150	128	150	0.94
2	9	0.00055	0.037	14.6	1.2	1	23	157	180	157	180	0.93
3	9	1.4e-08	9.4e-07	29.0	0.1	1	23	186	209	186	209	0.96
4	9	1.2e-06	8e-05	23.0	1.7	1	23	215	237	215	237	0.95
5	9	3.6e-05	0.0024	18.3	5.9	1	23	243	265	243	265	0.99
6	9	0.00046	0.032	14.8	0.2	2	21	273	292	272	293	0.94
7	9	1e-08	6.8e-07	29.5	0.7	1	23	679	701	679	701	0.98
8	9	3.6e-07	2.5e-05	24.6	1.7	1	23	707	730	707	730	0.97
9	9	2e-05	0.0013	19.1	4.5	1	23	736	758	736	758	0.98

Sequence Information

Coding Sequence: ATGATAAATGTCCAAGCTGACGATTTGACATGGACTAATAGTGCCATCTATCGTGAGGCCAGTGCAACCGCTGGTGTTCTTGGAAAAAATGGAGTTCGTGGATGGCTTGATGGAACAACAGAGAAGTCAAATTGGTTAAAGTTCGTCAGGTCCACCACGTATCCTCATGACGTCAACGTTCAACATTTGCTGATGGCAGGACAAATTTGGTACAAAGCGACGCGGGACATTCCGTCGGGACAAGAGTTGCTGCTAGGTCCACGGACGCCGCTGCCGCTGCAAGATGTTTTCACAGCTTCTAGtgGTCGCGACAGCTCTAACTTGAGCTCATCGAATTCCCAAACCCATACCGAAGACGAAGAACGAGAAGACACTGAACCACGCTGCTCCTTCTGCGACGCGCCGTATCCCAACATTGATGCATTAGATCGTCACTTAATACAAGCGCACGCGCAGCCAGCTTCGGCGTTTCACTGTGAGCTTTGCAATCGCGCTTATAGTACCCGAGCCCTGCTGCTGCGGCACCGTGCCCTCACGCACACCGATATTAGGAAATATCCTTGCGAAAATTGTCCAAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGCGCGCAGCACGTCGGTGCCCGCAGCCACGCCTGTCCCGAGTGCGGCAAGACCTTCGCCACGTCCTCCGGCCTCAAGCAGCACACCCACATACACTCCAGCGTGAAGCCGTTCCAGTGTAAAGTTTGCTATAAAGCTTACACacaattttcaaatttgtGTCGCCACAAGCGAATGCACGTGGCGTGTAGAGCGTTAGTGGAATGCGTCAAATGTGGCCAGTCTTTTCCATCATATGCCTCTTTGACGAAGCATAAGAGATTCTGTGATACTGCCACAGCTAGCGTAAATTTACGAGGCCAATTGCCCCAAGGTCTTCCTCAAATACCACCTCTACCAAACGTCATGAATACTCCAAACAATACAAATCCATTTCCAATGTACAGAGGACCCGGATTACCTCTGCCTTATAACACCTTCGCACATTATCCTGCTATATTCTCAGCAGCAGCCGCAGCGTGTCCACCAGAATTTCTTAGCCCTCTTCTTTTTAACGTGCAAGGAGCTAGACTTGCTATGGAACATGATATGGCAATGAACGCTAATTTAGTAGCCAAACAACAAGAAGGACGTATGTCTGTTAAAAGTATTGATAGCTCAACATCTTTGGATGATATGAAGAAGAAAGATTTAGATATTGAAAAAAGTGATGGAGACAGAGTGACTCCGAAACAATCGAGTTTGTATGTAAAACAATCTCCACCATCTGCCGAAGAAGCTTCCTCAAAACAACGGCCTTCTCCAGTTATGCCAATGTCGACGACAGTCCCACCCTATAGTTATGTCAGGgatgaaatgaaacaaaattctCCCTTCAATCTTTCAATGAAACATAATGACATATTAGGGAGCAAGTCTGTATCACCAGCACTGTCGAaagatatatctaaaaatttaGATGATATCGAGAAAAAATGTAGATATTCCGATATAGAGGAAGACACAGTAAAGGATCAGAATGACCAACCGCTTGATTTATCTGTTTCACGAAAACACGACAAAGAATCTGACATGGAAAATGACGACCATTCCCTTCAGCTTAACTCATCAGTAAAATCATATTCGCCTCCTGAAAGTCCAATTGATCGGGACAACAAGACCCCTGAAAACGAGACAACTAATGTTGACGTGGAAGCAGTTGAAATTGAAGATTCTCCTCAACCGTTAGTGTCGCCTCCAATTGCGTTCCCGATGCCGGTACATCCACAACATAATAACATCATCGACGCAATGTACCGGCCACGATTCCCTCAGTTTCACACATCAGAATCAATTCTTAGCTCGTCGCATTCCCCATACGTTCCTAgtccatttaattttttatcccCTCTTCTCGGCACTGATGGACCAGATCGGCAGACAAATGCATACGCAAAGTTTCGGGAACTCAGTTCAGCTTCGGGAAAGCTTCGCGATCGTTACGCTTGCAAGTTTTGTGGTAAAGTATTCCCGAGGAGCGCAAACTTGACACGCCATCTTCGGACACACACTGGAGAGCAACCTTACAAATGCAAGTATTGCGAGCGCTCTTTCTCAATATCATCCAATTTACAACGTCATGTACGAAACATTCACAATAAGGAGCGGCCCTTTCGTTGTACCCTGTGCGACAGATGCTTCGGCCAACAAACCAATCTCGATCGACATTTGAAGAAACATGACACTGAGGGCGGGGACTCCCCGAGTTCCGCTGATACTGAACAAGACACACGCTTCGATGATATTCGATCATTCATGGAAAAAGTGACTTGCTCTCCCAGTGCTGGATCACCGTCAGGGAATTCCCCTCATCCACCACACCCTCACCCTCACCGACCTCCACTTGCTATATCTACATAG
Protein Sequence: MINVQADDLTWTNSAIYREASATAGVLGKNGVRGWLDGTTEKSNWLKFVRSTTYPHDVNVQHLLMAGQIWYKATRDIPSGQELLLGPRTPLPLQDVFTASSGRDSSNLSSSNSQTHTEDEEREDTEPRCSFCDAPYPNIDALDRHLIQAHAQPASAFHCELCNRAYSTRALLLRHRALTHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCYKAYTQFSNLCRHKRMHVACRALVECVKCGQSFPSYASLTKHKRFCDTATASVNLRGQLPQGLPQIPPLPNVMNTPNNTNPFPMYRGPGLPLPYNTFAHYPAIFSAAAAACPPEFLSPLLFNVQGARLAMEHDMAMNANLVAKQQEGRMSVKSIDSSTSLDDMKKKDLDIEKSDGDRVTPKQSSLYVKQSPPSAEEASSKQRPSPVMPMSTTVPPYSYVRDEMKQNSPFNLSMKHNDILGSKSVSPALSKDISKNLDDIEKKCRYSDIEEDTVKDQNDQPLDLSVSRKHDKESDMENDDHSLQLNSSVKSYSPPESPIDRDNKTPENETTNVDVEAVEIEDSPQPLVSPPIAFPMPVHPQHNNIIDAMYRPRFPQFHTSESILSSSHSPYVPSPFNFLSPLLGTDGPDRQTNAYAKFRELSSASGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCTLCDRCFGQQTNLDRHLKKHDTEGGDSPSSADTEQDTRFDDIRSFMEKVTCSPSAGSPSGNSPHPPHPHPHRPPLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00212799;
90% Identity: iTF_00160049;
80% Identity: -