Acen017684.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- -
- Assembly
- GCA_905333075.2
- Location
- HG995373.1:6326192-6329511[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.4e-05 0.0037 19.4 2.6 1 23 17 39 17 39 0.96 2 15 0.00077 0.12 14.7 2.5 1 23 60 82 60 82 0.96 3 15 0.027 4.2 9.8 0.1 1 23 105 127 105 127 0.93 4 15 4.5 7e+02 2.8 1.1 5 23 135 154 132 154 0.93 5 15 0.0014 0.21 13.9 1.3 1 23 249 271 249 271 0.98 6 15 3.2e-05 0.005 19.0 1.4 1 23 277 299 277 299 0.98 7 15 0.002 0.31 13.3 1.0 1 23 306 328 306 328 0.94 8 15 6.4e-06 0.00099 21.2 5.6 1 23 334 356 334 356 0.98 9 15 0.00011 0.018 17.3 4.2 1 23 362 384 362 384 0.97 10 15 9.9e-05 0.015 17.5 1.5 1 23 390 412 390 412 0.97 11 15 1.2e-05 0.0018 20.4 6.0 1 23 418 440 418 440 0.97 12 15 3.4e-05 0.0053 18.9 0.8 1 23 447 470 447 470 0.97 13 15 3.3e-05 0.0051 19.0 4.0 1 23 481 504 481 504 0.96 14 15 0.17 27 7.3 0.2 2 20 508 526 507 528 0.92 15 15 6.5 1e+03 2.3 1.7 2 10 532 540 531 553 0.84
Sequence Information
- Coding Sequence
- ATGTTTCAGGGACCGGAATTGCTGGTAAAGCTGGAAAAGCTGAATGTACACAAATGTGAGAAATGCCCAAAAGTCTTCCCAAATACGAGTGACCTCATGAAACATAAGTCATATCATGAGGAATACTTCTTATCACATctTGTTAGTGCATATGTATATGTAGAAAGGGCCAAAATATTCAAATGTGACAAATGCACCAAAAGATTCGACAATAACAGAGATTTTATGCTTCATAAGCTTGCACACATACAGGAAAATGTgagaaatgaaagaaaaagCAACAAATTTCAGAACCATGATATTGTGAAGCCCTACAAGTGTCCAAATTGCGAAGTTAGTTATGCTGCGCAAAGTACTCTTGATGAACATTCAATTCTTCACTTGCCATTCCCTCACATCTGTGAGTGTGGCATTGGATATTATAACAGACAGGATTTGAAATGCCACATCAAATTGGTACATGGAACGAACATTAAAGAAGAGCTGGCTTTAACGCAAAATTTAGATCCACAAGAGGAACAAGTTATACCCCAAACCAAGCCTCAAGATAAACCCCAAAGAAAGCCTAAATCTAAATCcaagaataaaagaaaaacaataaaagtaaCTTTGAAGAAGGAAAATCCTAAAAAGAAAAAGTGGAAAGTTGCATTGAAAGGTGAAGATACtaacagcaataaacaaaaaacggaATGTGATATACCAGACCCAGATATAGAAATCAGAAAGACCTCTGATAATATGTATGAATGTCCTGAATGTAAGAAATTGTTTAAATACAAACAAATTCTTTTTATACATTACCGCATTCACTCTGGTGAACGCCCATACACTTGCCATTTATGTCCGAAGGCGTTTAACCAGGGcatcacattaaaaaaacatattgagaGGCACATGGCCACAGAGAAGATCTATGTGTGTAAACATTGCCCTAAAGCTTTTTCCTTGCCGTACTATAGGGATCGTCATGAAGAAATACACAGTTCGATTAAGGCTCACGAGTGTCCGTACTGCCACAAGGGATTCCACGATCAGTCCGCATTGATACGCCACAAACGAACACACACGGGAGACAAACGATACTGCTGCTCCTACTGCCCCAAAACATTCTGTGACGTCAGTGGCCTCAATGCACATAAATTACGtcatgagaaaaaaaaagagtttcAGTGTGAAATTTGCTATAAGAGATTTTATAACCGAACCGATGCAAAGAAACACATGGTGGTACACACTCATGAACGAAACTTTGCTTGTGACTATTGCAAAAAATGTTTCACGCATAAAGGTAATTTAATGACGCATGTACAGAGACATATGATTTTAAAGAAACATTACGTATGTGAGGAATGTAACAGAAAGTTTCTCACAAAGGAGTATCTAAAAAGACATATAATGgttatgcatacaaaaaacacatACAGAGCCAAACGTAAATTTGAATGTAAAGATTGCTCGAAACAATTCAACCATAGAGAAAATTTACGGAGTCACTATTTGAGTTCCCATTCAACTATTCGTTGTGATGAGTGCTTGCGGTATTTTGTAAGTCCAACCCATTTCGAAGGACACAAGTTGATTGAAAGTGTACAATGTGAAATATGCAACGAGAAATTCTATTGTGAAAATATGGAGAAGAAGCATTTTAAAGGTCATTTTCCCCAAAGTGTGAAAGAGATAAAAAGCGACACAAATAGCCAGAAAGAAATTTAG
- Protein Sequence
- MFQGPELLVKLEKLNVHKCEKCPKVFPNTSDLMKHKSYHEEYFLSHLVSAYVYVERAKIFKCDKCTKRFDNNRDFMLHKLAHIQENVRNERKSNKFQNHDIVKPYKCPNCEVSYAAQSTLDEHSILHLPFPHICECGIGYYNRQDLKCHIKLVHGTNIKEELALTQNLDPQEEQVIPQTKPQDKPQRKPKSKSKNKRKTIKVTLKKENPKKKKWKVALKGEDTNSNKQKTECDIPDPDIEIRKTSDNMYECPECKKLFKYKQILFIHYRIHSGERPYTCHLCPKAFNQGITLKKHIERHMATEKIYVCKHCPKAFSLPYYRDRHEEIHSSIKAHECPYCHKGFHDQSALIRHKRTHTGDKRYCCSYCPKTFCDVSGLNAHKLRHEKKKEFQCEICYKRFYNRTDAKKHMVVHTHERNFACDYCKKCFTHKGNLMTHVQRHMILKKHYVCEECNRKFLTKEYLKRHIMVMHTKNTYRAKRKFECKDCSKQFNHRENLRSHYLSSHSTIRCDECLRYFVSPTHFEGHKLIESVQCEICNEKFYCENMEKKHFKGHFPQSVKEIKSDTNSQKEI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00726704; iTF_00037079; iTF_00364262; iTF_01527584; iTF_00038047; iTF_01440324; iTF_00238030; iTF_00425691;
- 90% Identity
- -
- 80% Identity
- -