Alit014871.1
Basic Information
- Insect
- Agrochola litura
- Gene Symbol
- -
- Assembly
- GCA_949152395.1
- Location
- OX424498.1:21721835-21725303[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2e-06 0.00025 22.7 1.7 1 23 17 39 17 39 0.97 2 15 0.00071 0.088 14.7 2.3 1 23 60 82 60 82 0.96 3 15 0.018 2.3 10.3 0.1 1 20 105 124 105 127 0.88 4 15 2.5 3.1e+02 3.5 1.1 5 23 135 154 132 154 0.93 5 15 0.004 0.5 12.3 5.3 1 23 248 270 248 270 0.99 6 15 5.3e-06 0.00066 21.4 2.7 1 23 276 298 276 298 0.98 7 15 0.0021 0.26 13.2 1.1 1 23 305 327 305 327 0.94 8 15 3.5e-06 0.00043 22.0 4.5 1 23 333 355 333 355 0.98 9 15 3.1e-06 0.00038 22.1 0.3 1 23 361 383 361 383 0.98 10 15 1.6e-06 0.0002 23.0 1.5 1 23 389 411 389 411 0.98 11 15 1.5e-06 0.00019 23.1 4.6 1 23 417 439 417 439 0.97 12 15 2.8e-05 0.0035 19.1 1.0 1 23 446 469 446 469 0.97 13 15 0.00099 0.12 14.2 6.3 1 23 480 503 480 503 0.97 14 15 0.074 9.3 8.3 0.2 2 20 507 525 506 527 0.92 15 15 0.24 31 6.7 1.3 2 23 531 552 530 552 0.93
Sequence Information
- Coding Sequence
- ATGAAACTAGGACCAGAATTGTTGGTAAAGCTAGAAAAACTGAATGTACACAAATGTGAGAAATGCCCAAAAGTCTTCCCAAATATCAGTGACCTCACAAAACATATGACTTATCATGATGAATACTTCTTAACACATctcACTAGTGCATATGTATCTGTAGAAAGGGCCAGAATATTCAAATGTGACAAATGCAGCAAAAGATTCGATAATAACAGAGATTTTATGCTTCATAAGCTTGCACACATACAGGAGAATGTGAGAAATGAAAGAAAAATCAGCAAATTCCAGAACCATGATATTGTGAAACCCTACAAGTGTCCAGATTGCGATGTTAGTTATGCTGCACAAACTACTCTTGATGAACATTCTGTTCTTCACGAGCCATTCCCTCACATCTGTGAGTGTGGCATTGGATATTATACGAAACAGGATTTGAAATGCCACATCAAATTGGTACATGGAACGAAAATTAAAGTAGAGCCCACTTTGTCGCAAAATTTAGATCCAGAAGAGGACCAAGTTATACCCCAAACAAAGCCTCAAGACAAATCCCACCGAAAGTCTAAATCTAAATCCAAGAAGgggacaaaaataaaagaaaccataaagaaagaaaatcctAAAAAGAAGAAGTGGAAAGTTGCGCTGAAAGATAAAGATACtaacagcaataaaaaaaaaacagaatggaATGTTCCAGACCCAGATATAGAAATCAGAAAGACCTCCGATAATAAGTATGAATGTCCTGAATGTAAGAAATTATTTAGTTGCAAAAACCACCTTTTTATACATTACCGGGTTCACTCTGGTGAGCGCCCCTACACTTGCCATTTATGTCCGAAGGCGTTCAGCCAGTACACTACACTAAAAACACATATCGAGAGGCACATGGCCACAGAGAGGATCTATGTGTGCAAACATTGCCCCAAAGCTTTTACCCTGCCGTACTATAGGGATCGTCATGAAGAAATACACAGTGCAATTAAAGCTCACGAATGTCCGTATTGTCACAAGGGATTCCACGATCCGTCCGCATTGATACGCCACAAACGAACACACACAGGGGAAAAACGATACAGCTGCACTTACTGCCCTAAAACATTCAGTGACGTCAGTGGCCTCAATGCCCATGAATTACGTCATGAGAACAAAAAAGAGTTTGAGTGTGAAATTTGCTATAAGAGATTTTATAATCGAACTGATCTTAAGAATCACATGATGGTACACACTCATGACCGAAGCTTTGCTTGTGACTATTGCAAAAAATGTTTCACTCGTAAAAGTAATTTAATGCTGCATGTACAGAAGCATATGATTTTAAAGAAACATTTCGTATGTGAGGAATGTAACAGGAAGTTTCTTACAAAGGATTATCTAAAAAGACATATAAATgtcatgcacaaaaaaaatacattcagaCGCTTACttaaatttaaatgtaatgaTTGCTCGAAACAGTTCATccataaaaatagtttacataGTCACTATTTGAGTTCCCATTCAAGCATACGTTGTGATTTATGCTCGCGGTATTTTGTAAGTCCAACCCATTTCGAGGGACACAAGCTGATTGAGAGTGTACAATGTGAAATATGTGACGAGAAATTCTATTGTGAAAATATGAATGAGAAGCATTTAAAAGTTCATCTTccccaaaaagtaaaaaagataaaaagtgATACAAATAGCCTGAAAGAAGTGTAG
- Protein Sequence
- MKLGPELLVKLEKLNVHKCEKCPKVFPNISDLTKHMTYHDEYFLTHLTSAYVSVERARIFKCDKCSKRFDNNRDFMLHKLAHIQENVRNERKISKFQNHDIVKPYKCPDCDVSYAAQTTLDEHSVLHEPFPHICECGIGYYTKQDLKCHIKLVHGTKIKVEPTLSQNLDPEEDQVIPQTKPQDKSHRKSKSKSKKGTKIKETIKKENPKKKKWKVALKDKDTNSNKKKTEWNVPDPDIEIRKTSDNKYECPECKKLFSCKNHLFIHYRVHSGERPYTCHLCPKAFSQYTTLKTHIERHMATERIYVCKHCPKAFTLPYYRDRHEEIHSAIKAHECPYCHKGFHDPSALIRHKRTHTGEKRYSCTYCPKTFSDVSGLNAHELRHENKKEFECEICYKRFYNRTDLKNHMMVHTHDRSFACDYCKKCFTRKSNLMLHVQKHMILKKHFVCEECNRKFLTKDYLKRHINVMHKKNTFRRLLKFKCNDCSKQFIHKNSLHSHYLSSHSSIRCDLCSRYFVSPTHFEGHKLIESVQCEICDEKFYCENMNEKHLKVHLPQKVKKIKSDTNSLKEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00173458;
- 90% Identity
- -
- 80% Identity
- -