Acus000319.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073759.1:5229490-5230741[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.12 2.9e+02 3.7 0.2 17 48 7 38 3 43 0.80 2 13 1.1 2.6e+03 0.6 0.0 23 45 42 64 39 69 0.83 3 13 0.026 63 5.8 0.4 21 48 69 96 61 101 0.84 4 13 0.21 5.1e+02 2.9 0.3 21 48 98 125 96 127 0.88 5 13 0.0018 4.3 9.6 0.6 18 49 124 155 119 159 0.91 6 13 3 7.2e+03 -0.7 0.1 21 44 156 179 153 184 0.77 7 13 0.00096 2.3 10.4 0.2 21 48 185 212 181 216 0.92 8 13 0.0023 5.5 9.2 0.3 18 49 211 242 210 246 0.90 9 13 0.048 1.2e+02 5.0 0.5 18 49 240 271 239 275 0.88 10 13 0.093 2.2e+02 4.1 0.4 17 45 268 296 264 301 0.83 11 13 0.097 2.3e+02 4.0 0.5 21 48 301 328 297 330 0.88 12 13 0.028 67 5.7 0.1 18 45 327 354 325 359 0.86 13 13 0.0007 1.7 10.9 0.2 21 49 359 387 355 388 0.92
Sequence Information
- Coding Sequence
- atgaaaaatcatgtaatggcccgtcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcaaaaTCTGGACACATGAAAAATCATGTAATGGCCTGTCATACAGGTaagaagcctcatcactgtccTCACTGTGACTTTAAATCAGCATGGTCCGGAGATATGAAAAGACATGTAATGGCctgtcatacaggtgagaagcctcatcaatgtcctctcTGCGATTATAAAACAGTAACATCTGGAGCTATGAAAAGGCATGTAATGGCctgtcatacaggtgagaagcctcatcaatgtcctcactgtgactTTAAATCAGCAAGGTCTGGAgttattaaaaaacatgtaattgcccgtcatacaggtgagaaacctcatcaatgtcctcactgtgattataaatcagcagaaTCTGGAAAGATAAAAAGGCATATAATAGTCCGTCATACAGGGGAGAAAcgtcatcaatgtcctcactgtgattataaatcagcagaaTCTGGAAACATGAAAATACATGTAATGGCctgtcatacaggtgagaagcctcatcactgtcctcactgtgattataaatcagcacaatcTGGAGATATTAAAAGACATGtgatggcccgtcatacaggtgagaagcctcatcactgtcctcactgtgattataaatcagcacaatcTGGAACTATGAAAAAGCATGTTATGGCCCggcatacaggtgagaaacctcatcaatgtcctcactgtgattataaatcagcagaaTCTGGACACATGAAAAATcatgtaatggcccgtcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcacaatctggagctatgaaaatacatgtaatgacctgtcatacaggtgagaagcctcatcaatgtcctcactgtgattataagtCAGTGAACTCTGCAACTATGAAAAAACATGTTATAGCCCggcatacaggtgagaagcctcatcactgtcctcactgtgattataaatcagcacaatcTGGAACTATGAAAAAACATGTTATGGCCTggcatacaggtgagaagcctcatcaatgtcctcactgtgattatacaTCAGCAGAATCTGGAAATATAAAAAGGCATATAATTAAAAGACATGTTATATGA
- Protein Sequence
- MKNHVMARHTGEKPHQCPHCDYKSAKSGHMKNHVMACHTGKKPHHCPHCDFKSAWSGDMKRHVMACHTGEKPHQCPLCDYKTVTSGAMKRHVMACHTGEKPHQCPHCDFKSARSGVIKKHVIARHTGEKPHQCPHCDYKSAESGKIKRHIIVRHTGEKRHQCPHCDYKSAESGNMKIHVMACHTGEKPHHCPHCDYKSAQSGDIKRHVMARHTGEKPHHCPHCDYKSAQSGTMKKHVMARHTGEKPHQCPHCDYKSAESGHMKNHVMARHTGEKPHQCPHCDYKSAQSGAMKIHVMTCHTGEKPHQCPHCDYKSVNSATMKKHVIARHTGEKPHHCPHCDYKSAQSGTMKKHVMAWHTGEKPHQCPHCDYTSAESGNIKRHIIKRHVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00165545; iTF_00165517; iTF_00165528; iTF_00165724; iTF_00165727; iTF_00165726; iTF_00165538;
- 90% Identity
- iTF_00165538;
- 80% Identity
- iTF_00165545;