Acus000297.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073759.1:5030838-5032013[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0012 2.9 10.1 0.2 18 49 3 34 1 40 0.89 2 13 0.6 1.5e+03 1.5 0.1 18 50 32 64 30 67 0.84 3 13 0.96 2.3e+03 0.8 0.1 22 46 65 89 61 94 0.83 4 13 0.027 65 5.8 0.1 21 48 93 120 91 125 0.83 5 13 0.21 5e+02 3.0 0.4 21 48 122 149 118 151 0.88 6 13 0.0016 3.9 9.7 0.5 18 49 148 179 142 183 0.91 7 13 2.7 6.5e+03 -0.6 0.1 21 45 180 204 177 209 0.77 8 13 0.00065 1.6 11.0 0.3 21 49 209 237 205 242 0.90 9 13 0.065 1.6e+02 4.6 0.4 18 48 235 265 234 268 0.89 10 13 0.0077 19 7.5 1.3 8 49 252 295 245 300 0.83 11 13 0.05 1.2e+02 4.9 0.3 18 48 293 323 290 325 0.89 12 13 0.00022 0.54 12.5 0.4 17 49 321 353 308 357 0.90 13 13 0.0012 2.9 10.1 0.5 18 49 351 382 350 385 0.91
Sequence Information
- Coding Sequence
- atggcccgtcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcaaaaTCTGGAGATATGAAAAGACATGtgatggcccgtcatacaggtgagaagcctcatcactgttcTCACTGTGATTATGAATCAGCACAATCTGGACACATGAAAAATCATGTAATGGCCTGTCATACAGGTaagaagcctcatcactgtccTCACTGTGACTTTAAATCAGCATGGTCTGGAGATATGAAAAGACATGTAATGGCctgtcatacaggtgagaagcctcatcaatgtcctctcTGCGATTATAAAACAGTAACATCTGGAGCTATGAAAAGGCATGTAATGGCctgtcatacaggtgagaagcctcatcaatgtcctcactgtgactTTAAATCAGCAAGGTCTGGAgttattaaaaaacatgtaattgcccgtcatacaggtgagaaacctcatcaatgtcctcactgtgattataaatcagcagaaTCTGGAAAGATAAAAAGGCATATAATAGTCCGTCATACAGGGGAGAAAcgtcatcaatgtcctcactgtgattataaatcagcagaaTCTGGAAACATGAAAATACATGTAATGGCctgtcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcacaatcTGGAGATATTAAAAGACATGtgatggcccgtcatacaggtgagaagcctcatcactgtcctcactgtgattataaatcagcaccaTCTGGAACTATGAAAAAGCATATTATGGCCCggcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcagatTCTGGACACATGAAAAATcatgtaatggcccgtcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcagaaTCTGGACACATGAAAAATcatgtaatggcccgtcatacaggtgagaagcctcatcaatgtcctcactgtgattataaatcagcacaatctggagctattaaaaggcatataatggctcgtcatacaggtgagaagcctcatcaatgtcctcactgtgattatacaTCAGCAGAATCTGGAAAGATAAAAAGGCATATAATAGTCCGTCATACAGGGGAGAAACGTCATCAATGTCCTCTCTAA
- Protein Sequence
- MARHTGEKPHQCPHCDYKSAKSGDMKRHVMARHTGEKPHHCSHCDYESAQSGHMKNHVMACHTGKKPHHCPHCDFKSAWSGDMKRHVMACHTGEKPHQCPLCDYKTVTSGAMKRHVMACHTGEKPHQCPHCDFKSARSGVIKKHVIARHTGEKPHQCPHCDYKSAESGKIKRHIIVRHTGEKRHQCPHCDYKSAESGNMKIHVMACHTGEKPHQCPHCDYKSAQSGDIKRHVMARHTGEKPHHCPHCDYKSAPSGTMKKHIMARHTGEKPHQCPHCDYKSADSGHMKNHVMARHTGEKPHQCPHCDYKSAESGHMKNHVMARHTGEKPHQCPHCDYKSAQSGAIKRHIMARHTGEKPHQCPHCDYTSAESGKIKRHIIVRHTGEKRHQCPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00165740;
- 90% Identity
- iTF_00165538;
- 80% Identity
- iTF_00165538;