Amel002063.1
Basic Information
- Insect
- Anopheles melas
- Gene Symbol
- -
- Assembly
- GCA_000473525.2
- Location
- AXCO02009619.1:1-12042[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.7e-12 5.3e-09 35.5 0.0 2 39 138 176 137 180 0.90 2 4 1.2e-12 1.7e-09 37.0 0.1 2 39 192 229 191 232 0.94 3 4 1.8e-18 2.6e-15 55.7 0.0 3 45 248 291 246 291 0.97 4 4 1.2e-17 1.8e-14 53.0 0.0 1 43 298 341 298 342 0.96
Sequence Information
- Coding Sequence
- CCGGCGTCAAGTGTGTCGTCCTCATCGTCCAGCCAGCATCCGGAGAACTTGGTTACTGGCAGCGGTGGTGCTGCCGGCTCGGTGACGCCTGGTCCGCCCACCAACAATAGCAACGGCAACGGAGCGGGCGGAGATGAGCTGAAGCCGAGACTGAACCTGAAGCAGGAAAACATCAGCGAAGAGCAGCAGCATCAAACGATGGAGGTCGAGCAAGACCAGTCCTCGATGCACGGCATGGTGGTAACGCCGGAAATTTCGGGCATCATGAACCAGAGCCAAATGAGCGATATGTACCAGTCGGATGCTAGCGAGGACTCGAAGGTGGGCATTCTGGACGGTTCCTCGATGCAGTACACCAATCTGACCAGCCCCAACGAAGCGAAAACGCCTACCGGACCGAAAACATGGACCGCGGAAGATATGGAGTCGGCGCTCGAAGCGCTACGCTCTCACAACATGAGCTTGACTAAGGCCTCTGCTACGTACGGTATTCCATCGACGACACTGTGGCAGCGGGCGCACCGGCTCGGCATCGACACACCGAAAAAGGAGGGTCCGTCCAAGACGTGGAACGAGGACTCGCTCAACAGCGCACTGGAAGCGCTACGGACGGGCACGATCTCCGCCAACAAGGCCTCGAAAGCGTTCGGCATACCGTCGTCGACGCTGTACAAGATTGCGCGCCGCGAAGGCATCCGCCTGGCGGCGCCGTTCAATGCCGCACCCACCACCTGGTCCGCGGAAGATTTGGACCGTGCCTTGGAAGCGATCCGTGCCGGGCAGACCTCCGTGCAGAAGGCCAGCACCGAGTTCGGCATTCCCACTGGCACACTGTACGGGCGCTGCAAGCGCGAGGGCATCGAGCTGTCCCGATCGAATCCCACGCCCTGGTCCGAAGACGCGATGATGGAGGCGTTGGAATCTGTAAAGCAAGGACACATGTCCATCAATCAAGCCGCCATCCACTACAACCTACCGTACAGCTCACTGTACGGTCGGTTCAAGCGCGGCAAGTACGATACGCCCAGCTCGGGAGGCGGCGGCGGTGGCAGTTCGTCCAATGCTGCTGCTGCTGCTGCTACCGGTGGAGGTGGCGCGGGCAGCGGTGGCGGTAGTGGCGCCGGCAGCGCCGCTAGTGCCGGAACAGGTGGCAATAATGTTGGCAGTAGTCCCCAGATGGAGTTTAAAATAGAACCACAGCATAACGATCATAGTCCAGAGAACACG
- Protein Sequence
- PASSVSSSSSSQHPENLVTGSGGAAGSVTPGPPTNNSNGNGAGGDELKPRLNLKQENISEEQQHQTMEVEQDQSSMHGMVVTPEISGIMNQSQMSDMYQSDASEDSKVGILDGSSMQYTNLTSPNEAKTPTGPKTWTAEDMESALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEDSLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLDRALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPSSGGGGGGSSSNAAAAAATGGGGAGSGGGSGAGSAASAGTGGNNVGSSPQMEFKIEPQHNDHSPENT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00106915; iTF_00102948; iTF_00106338; iTF_00100231;
- 90% Identity
- iTF_00106915;
- 80% Identity
- -