Afar000851.1
Basic Information
- Insect
- Anopheles farauti
- Gene Symbol
- -
- Assembly
- GCA_000473445.2
- Location
- KI915044.1:12538682-12540341[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.4e-12 3.8e-09 35.6 0.0 2 39 93 131 92 135 0.90 2 4 7.7e-13 1.2e-09 37.2 0.1 2 39 147 184 146 187 0.94 3 4 1.1e-18 1.8e-15 55.9 0.0 3 45 203 246 201 246 0.97 4 4 7.8e-18 1.3e-14 53.2 0.0 1 43 253 296 253 297 0.96
Sequence Information
- Coding Sequence
- ATGAAACCCAGACTGAACTTGAAGCAGGAGAACCTAAGCGATGGCACTGATCAGCATCAGTCGATGGAGGTCGAGCAAGATCAATCGTCCATGCACGGTATGGTGGTGACGCCAGAAATATCGGGTATCATGAATCAGAGTCAAATGAGCGATATGTATCAATCAGATGCTAGTGAAGACTCGAAGGTGGGCATTTTGGACGGCTCTTCAATGCAGTACACAAATCTAACGAGTCCGAACGAAGCAAAAACGCCAACTGGGCCAAAAACGTGGACAGCTGAGGATATGGAGTCAGCTCTAGAGGCACTTCGCTCCCACAATATGAGCTTGACGAAGGCATCTGCAACCTACGGTATTCCATCGACGACACTGTGGCAGCGGGCACACCGCCTTGGCATTGATACACCGAAGAAGGAAGGTCCATCGAAAACGTGGAACGAGGATTCACTTAACAGTGCGCTTGAAGCATTGCGAACGGGTACGATCTCTGCCAACAAGGCATCGAAAGCGTTCGGCATTCCGTCGTCCACGTTGTACAAGATCGCTCGTCGCGAAGGCATCCGACTGGCGGCACCATTCAATGCTGCTCCCACTACTTGGTCCGCGGAGGATCTGGACCGTGCCTTGGAAGCGATCCGTGCCGGACAAACGTCGGTACAGAAAGCGAGCACGGAATTTGGCATTCCGACCGGTACGCTATACGGACGTTGCAAGCGCGAAGGCATCGAATTGTCGCGCTCCAATCCCACGCCCTGGTCGGAAGACGCGATGATGGAGGCCTTAGAATCAGTGAAGCAAGGACATATGTCGATCAATCAAGCCGCCATCCACTACAACCTGCCGTACAGCTCACTGTACGGCCGGTTCAAACGGGGTAAATATGATACACCCAGCTCTGGAGGCGGCGGTGGTGGCAGTTCATCCAATGCTGCTGCTGCTGCTGCTGCTACCGGTGGCAGCGCTGGCGGTGGTGGCGGCGGCGGCGGCGGCAATGCCGCGAGTGCCGGAACAGGCGGCAATAATGTTGGCGGTAGTCCCCAGATGGAGTTTAAAATAGAACCACAGCATAACGATCATAGCCCAGAGAACACGGTAAATTACAGTTATTATTAA
- Protein Sequence
- MKPRLNLKQENLSDGTDQHQSMEVEQDQSSMHGMVVTPEISGIMNQSQMSDMYQSDASEDSKVGILDGSSMQYTNLTSPNEAKTPTGPKTWTAEDMESALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEDSLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLDRALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPSSGGGGGGSSSNAAAAAAATGGSAGGGGGGGGGNAASAGTGGNNVGGSPQMEFKIEPQHNDHSPENTVNYSYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00104297;
- 90% Identity
- iTF_00106338; iTF_00102948;
- 80% Identity
- iTF_00106338; iTF_00102948;