Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.9e-12 4.8e-09 35.8 0.0 2 39 130 168 129 172 0.90

2 4 6.1e-13 1.6e-09 37.3 0.1 2 39 184 221 183 224 0.94

3 4 9.1e-19 2.3e-15 56.0 0.0 3 45 240 283 238 283 0.97

4 4 6.2e-18 1.6e-14 53.3 0.0 1 43 290 333 290 334 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.9e-12	4.8e-09	35.8	0.0	2	39	130	168	129	172	0.90
2	4	6.1e-13	1.6e-09	37.3	0.1	2	39	184	221	183	224	0.94
3	4	9.1e-19	2.3e-15	56.0	0.0	3	45	240	283	238	283	0.97
4	4	6.2e-18	1.6e-14	53.3	0.0	1	43	290	333	290	334	0.96

Coding Sequence: CTGgtcactggtggtggtggtactgcAGGGAACGTGACACCAGGTCCTCCTACGACCACCAACAGCAATGGCAACGGTGCCGGAGGTCCACAGACGGGGGGCACCGATGATATGAAACCCAGACTGAACTTGAAGCAGGAGAACCTAAGTGATGGCACTGATCAGCATCAGTCGATGGAGGTCGAACAAGATCAATCGTCCATGCACGGTATGGTGGTGACGCCAGAAATATCGGGTATCATGAATCAGAGTCAAATGAGCGATATGTATCAATCAGATGCCAGCGAAGACTCGAAGGTGGGCATTTTGGACGGCTCTTCAATGCAGTACACAAATCTAACGAGtccgaacgaagcaaaaacgcCAACTGGGCCAAAAACGTGGACAGCTGAGGATATGGAGTCGGCTCTGGAAGCTCTACGCTCCCATAATATGAGCTTGACGAAGGCATCTGCAACTTATGGTATTCCATCGACGACACTGTGGCAGCGGGCACACCGCCTTGGCATTGACACACCGAAGAAGGAGGGTCCGTCGAAAACGTGGAACGAGGATTCGCTCAACAGTGCGCTTGAAGCGCTGCGAACGGGTACGATCTCTGCCAACAAGGCATCGAAAGCGTTCGGCATTCCGTCGTCCACGTTGTACAAGATCGCTCGTCGCGAAGGCATCCGACTGGCGGCACCATTCAATGCTGCTCCCACTACTTGGTCCGCGGAGGATCTGGACCGTGCCTTGGAAGCGATCCGTGCCGGGCAAACGTCGGTACAGAAAGCGAGCACGGAATTTGGCATTCCGACCGGTACGCTATACGGGCGTTGCAAGCGCGAAGGCATCGAACTGTCGCGCTCCAATCCCACGCCCTGGTCGGAGGACGCGATGATGGAGGCCTTAGAATCAGTGAAGCAAGGACATATGTCGATCAATCAAGCCGCCATCCACTACAACCTGCCGTACAGTTCACTGTACGGCCGGTTCAAACGGGGTAAATATGATACACCCAGCTCtggaggcggcggtggtggcagttcATCCAAT
Protein Sequence: LVTGGGGTAGNVTPGPPTTTNSNGNGAGGPQTGGTDDMKPRLNLKQENLSDGTDQHQSMEVEQDQSSMHGMVVTPEISGIMNQSQMSDMYQSDASEDSKVGILDGSSMQYTNLTSPNEAKTPTGPKTWTAEDMESALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEDSLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLDRALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPSSGGGGGGSSSN

Sequence clustering based on sequence similarity using MMseqs2