Amac006409.1
Basic Information
- Insect
- Anopheles maculipalpis
- Gene Symbol
- -
- Assembly
- GCA_943734865.1
- Location
- CALSEK010000098.1:183450-186599[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.01 32 4.6 0.0 22 46 285 309 281 315 0.88 2 8 0.26 8.1e+02 0.1 0.1 22 45 313 336 309 339 0.85 3 8 0.0035 11 6.1 0.3 21 46 340 365 335 372 0.85 4 8 0.0032 10 6.2 0.0 21 43 454 476 442 485 0.85 5 8 2.9 9.3e+03 -3.3 0.1 27 49 609 630 607 633 0.80 6 8 0.00088 2.8 8.0 0.1 8 46 669 708 663 714 0.77 7 8 0.018 57 3.8 0.0 27 45 717 735 712 739 0.89 8 8 0.0015 4.8 7.2 1.8 18 44 765 792 759 796 0.81
Sequence Information
- Coding Sequence
- ATGGCAGAAGATTTATCGATCAATAAAAATAAGATATTCACCCAACGGTACGGCAACAGTAATAACGATATTTGTCGGCTGTGTTTGAAAAATGAAGCCCACATGGAACCGCTGTTCTATTCGAACCTTTTTCCCAACATTTTACTCACGAAAAAGATATACGATTGCACTTCCATCCAGATAATCTACGAGCGCAACTTGCCGATGTTTGTGTGCAAACTTTGCGCCAACAAGCTGGACGAGTACGTGCGGTTTCGGGACCGGTGCATAGCAAATGATGAATTTCTACGCAATGCTCTGGCGGCATTCGATGCCAACGGTGGAAGCTGTTCGAGTGGGATTAAGATGGAACCGGAAGACACATCGCCACCTCCACCGTTGCCACCGACAGCTCCGACGACGGCAAAGTTTGCCCACTGCCTTGCGGTAACGCCGATGGAACTAAACTGTGCCCTTGTTGCGGCTGCTGCCGTTGCAGCCGGTCACCAGAGCAGCAAGCGCGAGCCACCGGATGTGGAGGAAAGCCATGAAAGATATGGTTCCGGTGCTGTCTCTCCCGACCGATCGAGCTGTGGACGAATGGCAACGGTAGACGAGCTGCCATCCCTGAAACAAACGCACGACGATCGATATCGGAGTGGCGAAGAGGAGGACGATCTACCTGCTGACGATGCGTACGGAGAACCAAACCCCGGTGCCAAGCAGTACGTGTGCGAGGTGTGTTCGAAATCGTTCAGAATCCGCCATCATTTGCTTGTGCATAGGCACACGCACGTGGACAATCATGCAGCGCCGACCAACGGTTTGCTGCACGGTGGATCGGACTTTAATGGCGGCGTAACCGGTAGcgggaaacagtcgtataattgtcccaaatgcgccaaagtgttcgtcaacaagggtaatctgctgaaccatctcgagacgcacacgaacgagaagagctacgcgtgtgatatctgcacgaaaacgttcaagtacaatgtgcagctgcggttgcatatgcgcatccacaccggcgaacggccgcacaagtgcgagatttgtaatcgcggattttcgcaactttcaaatctgcgttcccaccgaaaaactcactccaaaGTCAAAccgtacaaatgccatttatgcctcaaaagcttcaccatgctggacaaccttaccgcgcacagtgcaaaatgtctgaaggacaagttccgctgcacgctctgttcgaaatcgttcgccaaggagggtaacctcctgtcgcacctgcagtcccacaccgatggcattgtggagaagatgttcaagtgtgaaatgtgtccgaaaagtttcaaaaacaaggaggactggaaacggcacgtgcgtgttcatacgggcgaaaaaccgtacacttgcgatatctgctcgaaagggttcgcccaaaaggcgaatctactctcccaccgcaaaacgcacctgaagccaaacgtggtgtacaaatgtgaacgctgtgcgcgtacgtttcgatcccagaaagtcCTCCAGCTACATGTGCCCAAGTGTTCCGGCATTGGTGTGAGTGATGGGACGAGTGTTCCTTCCGCTCCAGCTACACCGGTGTCGGAATCGGTTCCGGATTCTCCGAGTCCGGGAACGGCCGTCACCCAGTCGAACACGGCATCCTCTACCGTGGCTTCGGCAAACGACACGCCCACACTATCGGAAGCTCTATCCGATCTGTTGCGGTACGAAATCGCGTTACGAGCACCGCTGGAACTGCAGCAAATGCTGCTCGGGCACATTGATCGCAAGAAGCCACAAAATGGAACTGGCGGCAAAGCGACCGGACGGCGCTACAGGTGTGATGTGTGCTTCAAGGGCTACTCCCAGTATCCGTCACTGATCAAGCATCGAAAGCTACACTTCAAGGTACCTCCACTGGTAAAGGTTCTGGCGGGTAAGGGAAAGCACGACGCCGACTACGAGGACCACGAGGAACCACGGGATGCGGGATGTGACGAGCATGCGACTGATGGCCGACACCTAgacgggacgacaccaccaccggagccgcacgatccaatcgagcggccgtacagctgtgatatatgcggtaagaactttaaatacaatcgtaacctgaaggtgcacggcaagctgcacataaaagcgaaccgttttaagtgtgacaagtgtaccaccacctttgcacaggcggaagatttgaggcggcatctgaccacccacccgaccgatgccggcaggagcttcagctgcgagtactgctcgaaccggttccgctcgaacgaggacctgaagcggcaccgacgctcccacaccggcgagcggcccttccgctgcccgcactgcccgaaagcgtttacccagcagtcgaaccttcgggcccacgcgaggatccacgagcgCTAG
- Protein Sequence
- MAEDLSINKNKIFTQRYGNSNNDICRLCLKNEAHMEPLFYSNLFPNILLTKKIYDCTSIQIIYERNLPMFVCKLCANKLDEYVRFRDRCIANDEFLRNALAAFDANGGSCSSGIKMEPEDTSPPPPLPPTAPTTAKFAHCLAVTPMELNCALVAAAAVAAGHQSSKREPPDVEESHERYGSGAVSPDRSSCGRMATVDELPSLKQTHDDRYRSGEEEDDLPADDAYGEPNPGAKQYVCEVCSKSFRIRHHLLVHRHTHVDNHAAPTNGLLHGGSDFNGGVTGSGKQSYNCPKCAKVFVNKGNLLNHLETHTNEKSYACDICTKTFKYNVQLRLHMRIHTGERPHKCEICNRGFSQLSNLRSHRKTHSKVKPYKCHLCLKSFTMLDNLTAHSAKCLKDKFRCTLCSKSFAKEGNLLSHLQSHTDGIVEKMFKCEMCPKSFKNKEDWKRHVRVHTGEKPYTCDICSKGFAQKANLLSHRKTHLKPNVVYKCERCARTFRSQKVLQLHVPKCSGIGVSDGTSVPSAPATPVSESVPDSPSPGTAVTQSNTASSTVASANDTPTLSEALSDLLRYEIALRAPLELQQMLLGHIDRKKPQNGTGGKATGRRYRCDVCFKGYSQYPSLIKHRKLHFKVPPLVKVLAGKGKHDADYEDHEEPRDAGCDEHATDGRHLDGTTPPPEPHDPIERPYSCDICGKNFKYNRNLKVHGKLHIKANRFKCDKCTTTFAQAEDLRRHLTTHPTDAGRSFSCEYCSNRFRSNEDLKRHRRSHTGERPFRCPHCPKAFTQQSNLRAHARIHER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00100445;
- 90% Identity
- iTF_00103810; iTF_00108537;
- 80% Identity
- iTF_00103810;