Basic Information

Insect: Anopheles arabiensis
Gene Symbol: -
Assembly: GCA_016920715.1
Location: NC:108863991-108868897[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3 9.3e+03 -3.7 0.5 9 26 78 95 77 97 0.79

2 13 2.2 6.9e+03 -3.3 0.4 15 35 105 124 99 134 0.53

3 13 1.4 4.4e+03 -2.6 0.1 27 46 212 231 209 237 0.84

4 13 0.36 1.1e+03 -0.7 0.0 26 32 371 377 365 388 0.74

5 13 0.32 9.7e+02 -0.5 0.0 26 48 437 459 432 464 0.82

6 13 0.0033 10 5.8 0.0 21 46 460 485 455 491 0.85

7 13 0.00015 0.45 10.2 0.0 21 45 488 512 484 519 0.87

8 13 0.004 12 5.6 0.1 21 45 516 540 512 545 0.89

9 13 0.12 3.8e+02 0.8 0.0 21 48 568 595 564 600 0.83

10 13 0.00016 0.48 10.1 0.1 21 52 597 628 587 629 0.82

11 13 0.026 79 3.0 0.0 22 45 654 677 651 684 0.84

12 13 0.0015 4.6 6.9 0.2 21 48 681 708 677 712 0.86

13 13 0.00025 0.77 9.4 0.0 21 45 709 733 706 739 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3	9.3e+03	-3.7	0.5	9	26	78	95	77	97	0.79
2	13	2.2	6.9e+03	-3.3	0.4	15	35	105	124	99	134	0.53
3	13	1.4	4.4e+03	-2.6	0.1	27	46	212	231	209	237	0.84
4	13	0.36	1.1e+03	-0.7	0.0	26	32	371	377	365	388	0.74
5	13	0.32	9.7e+02	-0.5	0.0	26	48	437	459	432	464	0.82
6	13	0.0033	10	5.8	0.0	21	46	460	485	455	491	0.85
7	13	0.00015	0.45	10.2	0.0	21	45	488	512	484	519	0.87
8	13	0.004	12	5.6	0.1	21	45	516	540	512	545	0.89
9	13	0.12	3.8e+02	0.8	0.0	21	48	568	595	564	600	0.83
10	13	0.00016	0.48	10.1	0.1	21	52	597	628	587	629	0.82
11	13	0.026	79	3.0	0.0	22	45	654	677	651	684	0.84
12	13	0.0015	4.6	6.9	0.2	21	48	681	708	677	712	0.86
13	13	0.00025	0.77	9.4	0.0	21	45	709	733	706	739	0.91

Sequence Information

Coding Sequence: ATGCTGGGCAAGTATGGCGAGGCGAGTTCCGGCTCGATGAAAAACCTGGAAAATGGACTGCGCGACCGGGTGCTTTACCATCAGAATATGCTGAGCATGAACCTGACAACCGAGTTTTACCACACTCCATTCCTTACGGCCGGCAGTGGTAGCAACGTTGAAACAGCTGCAATCGTAGTAGGCGCTCCCGCGCTGGCACAGTCGCAAAAGATGCTCAACAGTCTCGCATCCCCCTCTGGATtagcctcctcctcctcttccagCACCTCGCAACAGCACGCCACTAATGGGGCAGCGCCGTCACAGACAGTCCCAAACAGTGTGTCCGCAGCGCAGCAGTATCAGTGTCAACTCTGCCAGAAGTGTTTCATCTCGAGCGCGTTACTGGTGCAGCATATGAAAACGCACGACAATAATGGGTTTATTGCGGGGCGTGAGACCGCCGGCAGCTAcggccaacagcagcagcagcagcagcagcaatcggtATCGTCGGCCTCTTCCCCCGTGACGGCAGTGGCATCGAGCAGCAAAACTAGTCCGCCAGTCGCAACGCAGCACATCATCAAGAGCGAGTACATCGGTGGAACCGTAACGAACCAGTATGCGTACGGTATGGCCAAGCAGTTCGAGTGTCACATCTGCCACAAGTCCTTCATGACGATGGTGAACCTGAACCTGCACATGAAGATACACGAAAGTGCAATAAAGCCGCTCGCAGCGACTCACATGTACGCGGGCCAGGCAGGCCTTGCCGGCAACTTGATTGCTGGATCGACCGCGGGCTACCATCACGGCGGGCAGCATCACAGTCATCTGTCGCAGCATCTCGCGGTTCAAAGCGCCAGCAGCAGTGCGGACGGGTTGTGCCAGATATGCCACAAAACGTTCAGCACGGCCGACCAGTTTGCGGCGCACATGAAGATCCACGAGAATGAGTTTAAAAATCGAGCGCTATATCATTCCGGTAGTGCGAACGATGGTGGCGAGGGAGCGCCAGCACCCACCAGTAATGGGGCTGGTGTCGGAGACCATTTCTACACCGCGTCACAGCCGCCACACCACCATCTGGGTCATGCACCGCCGCATCTCGATGCTAGCAAGGGCCATCGCTGCCCAATCTGTCACAAAATGTCCAACAACATCATCGAGCACATTAAACAGCACGAGGGTCAGCTGCAGGGCACGTCCGATGGGTCGGGTGCGGGGTATCATCCTATGAACGATGATTCCCAATCGTCGCTGGAAGAAGACAgcgacggtggcggtggtggtggcgctggCGGGGACGAGAGCCTGCGAAAGCACGAGTGCTTGATATGCCACAAAAAGTTCTCCAGCTCGGGCAACCTGGCGATACACATACGGGTGCATTCGGGCGAAAAGCCGTTCCGGTGCAGCGTGTGCGGCAAGGGCTTCATCCAGTCGAACAATCTGGCGACGCACATGAAGACGCACACGGGTGAAAAGCCGTACGCGTGCACCATCTGCGGCAAGAACTTTAGCCAGTCGAACAACCTGAAGACGCACATCCGGACGCACACGGGCGAAAAGCCGTACGCGTGTACAATCTGCGGCAAGCGCTTCAACCAGAAGAACAACCTGACCACGCACATGCGCACACACCAGCTGGTGTGCATGGTGTGCGGGGTGCAGTTCATGCATCCGATCGATCTGGCGACCCACATGAAGTTCCACAACGACGAAAAACCCTACATCTGCTCGGTGTGCAACAAGGTCTACCTGAACCTGGACGAGCTGACCGAGCACATGAAGAAGACGCACAACCAGGTAAAGCCGTATCGGTGCCACATCTGCGACAAAACCTTTACCCAATCCAACAACCTGAAGACCCACATCAAGACGCACATCTTTCAGGATCCGTACAAGTGTCAGGTGTGTTCGCGCTCCTTCCAGAAGGAGGATGACTTCTCGCAGCACATGCTGGTCCACACGGCCGACAAGCCGTACGAGTGTACGTACTGCGGCAAGCGGTTCATCCAGTCGAACAACCTGAAAACGCACGTGCGCACGCACACGGGCGAAAAGCCGTACCGGTGCACGATCTGCGCGAAGCACTTTAACCAGAAGAACAATCTCAACACGCACATGCGCATCCACACGGGGGAGAAACCGTTCGAGTGTACCATCTGCGACAAGCGCTTTAATCAGTCGAACAATTTGaacaaacacattaaaacacaCGGCCAGGAGaaggatcagcagcagcagcagtcccagcagcagcagcagcagcagaaccaacaacaacaacagcaagtccagcaacaacagcagcagcagcagcaacatgcgAGTTGA
Protein Sequence: MLGKYGEASSGSMKNLENGLRDRVLYHQNMLSMNLTTEFYHTPFLTAGSGSNVETAAIVVGAPALAQSQKMLNSLASPSGLASSSSSSTSQQHATNGAAPSQTVPNSVSAAQQYQCQLCQKCFISSALLVQHMKTHDNNGFIAGRETAGSYGQQQQQQQQQSVSSASSPVTAVASSSKTSPPVATQHIIKSEYIGGTVTNQYAYGMAKQFECHICHKSFMTMVNLNLHMKIHESAIKPLAATHMYAGQAGLAGNLIAGSTAGYHHGGQHHSHLSQHLAVQSASSSADGLCQICHKTFSTADQFAAHMKIHENEFKNRALYHSGSANDGGEGAPAPTSNGAGVGDHFYTASQPPHHHLGHAPPHLDASKGHRCPICHKMSNNIIEHIKQHEGQLQGTSDGSGAGYHPMNDDSQSSLEEDSDGGGGGGAGGDESLRKHECLICHKKFSSSGNLAIHIRVHSGEKPFRCSVCGKGFIQSNNLATHMKTHTGEKPYACTICGKNFSQSNNLKTHIRTHTGEKPYACTICGKRFNQKNNLTTHMRTHQLVCMVCGVQFMHPIDLATHMKFHNDEKPYICSVCNKVYLNLDELTEHMKKTHNQVKPYRCHICDKTFTQSNNLKTHIKTHIFQDPYKCQVCSRSFQKEDDFSQHMLVHTADKPYECTYCGKRFIQSNNLKTHVRTHTGEKPYRCTICAKHFNQKNNLNTHMRIHTGEKPFECTICDKRFNQSNNLNKHIKTHGQEKDQQQQQSQQQQQQQNQQQQQQVQQQQQQQQQHAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00101361;
90% Identity: iTF_00104825;
80% Identity: iTF_00093596;