Atri021439.1
Basic Information
- Insect
- Andrena trimmerana
- Gene Symbol
- -
- Assembly
- GCA_952773225.1
- Location
- OX731552.1:4902089-4906373[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.7 2.7e+02 2.8 7.7 2 23 243 265 242 265 0.96 2 20 0.029 2.9 9.0 4.9 1 23 315 337 315 337 0.98 3 20 0.2 20 6.4 2.1 1 23 386 408 386 408 0.98 4 20 0.03 3 9.0 0.3 1 20 462 481 462 483 0.93 5 20 0.00024 0.024 15.6 1.5 1 23 523 545 523 545 0.97 6 20 0.00083 0.084 13.9 0.1 1 23 593 615 593 615 0.97 7 20 0.0008 0.08 13.9 0.1 1 23 621 643 621 643 0.97 8 20 6.6e-07 6.7e-05 23.6 0.2 2 23 687 709 687 709 0.96 9 20 0.003 0.3 12.1 0.5 3 23 718 739 716 739 0.95 10 20 9.1e-06 0.00092 20.1 0.3 2 23 747 769 746 769 0.96 11 20 6.5e-05 0.0065 17.4 0.3 1 23 777 799 777 799 0.96 12 20 0.13 13 7.0 0.2 1 20 883 902 883 902 0.96 13 20 0.0006 0.061 14.3 0.1 2 23 922 943 921 943 0.96 14 20 0.00064 0.065 14.2 0.7 1 23 957 979 957 979 0.97 15 20 0.00049 0.049 14.6 5.3 2 23 1002 1024 1001 1024 0.90 16 20 0.033 3.4 8.8 2.0 2 23 1076 1098 1075 1098 0.93 17 20 0.0053 0.54 11.3 1.5 3 23 1129 1150 1127 1150 0.92 18 20 0.001 0.1 13.6 0.0 1 23 1157 1181 1157 1181 0.97 19 20 0.69 70 4.7 4.2 2 23 1187 1209 1186 1209 0.94 20 20 0.02 2.1 9.5 1.1 2 23 1239 1261 1239 1261 0.94
Sequence Information
- Coding Sequence
- ATGGACGAGGTGGTGGAGTTGCGGAACATGGAAAACGCGTGCAGGCTCTGCCTCTCCACCGACGAGGTCAAGTCGTCGGTGTTCGGGATGCAGGACTCCCCGGTATCGTTGGCGGCCAAGATCCAGACCTGCCTGTCGATCCAGATTTTATCCACGGACAGATTATCGACACAGATATGTGCACAGTGTGTTAGGAATGTGAATCAGTGGCACAATTATAAGGAAGCTTGTTTACGTTCGCAAGAAAAATTGCAGCACTGGTTGGAGAAGCATTCGCAGGCGAGTCCGATGGTTGTAACTATCAAGGACGAGCCTGTGGATCTAGATTTCTGCGAAGATAATATTGAGGTTATTTCGGAAACTACTATTGAATCGGATTTGGAGTCGAATACTCTAGATCATAGTGTAAACAATGTAGAAAGCGATATTCACACTCATGTACTGACAGACGAGGAAGCGGATGTACAGAAAGATCGGCCAGTATTGACGAAAGATACGGATGTCTCTTTGAAGCCGGAGCCCCAAGACGAGTATGATACCGACTGTACCATAGAAATAGAGTCTGTTACTGGCAGCGAACTTGTACCGAATCCCCTCTCGAATAAAGAAGATAGGGTGATGGAGGCTGATTCTACGCAGAAGTCTAATACGTCTGGCTCGCCGAATAAGAAGAAGATCAGACGGGGTCCACATACCCACTTCCGAGGGGCTCGTGTCTACAAGCAGAAGTGTGTGCACTGTCAAATACATCTGCATTCGAAGTACTCTTACACCAAGCACATGGAGAGATTCCACACGGAGAAGCCAAATGGCGATACTGGATCTGCGGAGCTGGAAGACGCCGAGGAGCTGGTCGAAGATGTGGAGGATGAATTGATGAGTATGGAGAAGGATGCTCCCCTGACGCAAGTACAGCAAAATATTATTAGCCAATTGAAAACGTTCTCCTGCCATTCCTGCAAGCAAACGTTCAACGATCGGAGAAGCACTCTCTCCCACATCCGCCAGCACATGCCCGATCTGAGGCCGTACACGTGTATCGCGTGTTTGACGGAGTTCCCGGATCGATCGATGTACAAGCTACATTGCGGGGCGTCCTTCGAGTGCGCGATGAAAATTGCGTTGGTCGTGCCGAATCACGGCGAGGAGAAGTACTTTACATGTAACATGTGCCTGCGTTCGATGCAGAACCGAAAGCAATTGCTTAGCCACCTATCGAAACACTCTGACAAACAGTACGAAGAACTAATTTCCCCGTCGCGATCACCCCCTAAATTAAAGCCAATAACCCCCCTTCCCTCTCCTAGACGAGAAGTGAGAAAACCTTTGCCCGATGCTCCGATCATTCCCCGTCCTTACAAAAACGGCGATCCCGCGCACAATCACATCTGCGATCTGTGCGGCATGATATATAGATACAAGCCCAACATGTTCAAGCACAGAGATCTGTGCCAACGTCTGTTACCAGAGGTCCGTACCTCTTACAAGTGTGTCCACTGCGGCATGACCTACCTAGTGTTCAAAAAGTTCCATAATCATATCACCTTCGAGCACAAGAAGAGAGACTTCGCGTGCTCGGAGTGTAACGCCAAGTTCAGATCGCCCAGCGACTTCTTGACCCACCACGAGACGCATCGCTTTGCCCGCAATAAAAAACAGTCCCTAGACTCGCAAAGCGAATCGGGGAAACAGGCGCTGAACATGCCGACACCTATCAAAGACTGGGACACGTTCGAGGCGGAGGTGAACGCGGGAAAGATACCGGACGGTAATCAGTACAGTTGCGCCCTGTGCAACCTGGAATTTGCCACGAGGGCAGAACTGACGGAGCACAGGAACCTCCACCTGAAAGTGAAGATTTATTCCTGCGTCATATGTCGTAGTATGTTTAGCAGCGCGGGTGCCCTGGAGATCCACATGAAGGATCACGGTATAGAGGATCCAAACGAGCGGAACGCGAATAGCTCGTGCGTGGAATATGGCAGCTTGGAGGAAGATTCGCGTGATTCAGCCACGGCGAACGCCAGCGCGACCTCCGACCCCGGAACGAACAAGAACGAGTGCGACGTGTGCGGCAAGGTCTTCTCGAATCTCGCGAACGTCAAGAGACACATGAGAAACATCCACCAGCCGGGCATCGTCCACGTCAACTGCACCGACTGTTCGCGCGTGTTCAAGACCAAGGAGTTACGCGACCGGCACGTGATAACCGAGCACAAGAACAAGAAGGCGATGCTCCAGTGTCCCCAATGCCCAAAGAGCTTCGTGTTCCAAGCGAATCTGAACCTGCACTTCAAGACCGCGCACAGTGAAAAACCGCAGGGCGGTCACAAATGCGACATCTGTGGAAAGGCCTTCATCGAGGAAGCGTCTCTGAAGATACACAGGAGCTGGCACAGCAGAGTGAACTCGCGGTTGAGCATACGATTCAGAGTGGGCGAGGATCAGAAGCCGCAGATCAAGCCCCAGATCAAGCCGCCGATCAAGCCGCCGATCAAGCCGCCGATCAAGCAGCCGATCAAGCCGCCGATCAAGCCGCCGATTGTGCCCAAAGAGGAGCAGGAGTTCAACACCAGCTCCGATCGGCCAGCCAGAGCGCGAAAGTCGTTCCCGAACCCGCCGACCTCCGCGAAGCCGCAGGGCAACTTCCAGTGTCAAGTTTGCAACGACAAGTTCAACGACGTGACAGAGCTGAGAGAACACTTGTGGGACGTGCACTGCGCCCGCAACAAGACCGAGAGGAATTTCATGGTGAACGAGCTGCAGTGCGAGATCTGCACGAACGTTTTCCCCGACAAACAGACGCTGGCCATGCACATGCAGTGGCACAAAGCCTACCCCATCCTCAGTGATATCAAGAACCCAAGCTTCCCGTGCGACGTTTGCGGGAAACTGTACAGCTCGAGAAAGGTGCTGATGAGACACAAGAAGCTCCATAAAGCCACGAGCGCGGCCGCCGCCAAGTGCCAATCGGAGACCACGAAATCCTCGCCCAGCCAGTGCATGTGCAACGTCTGCCACAAGGTGTTCAGCAGCAACCAGTCGCTGCAACGTCACAAGTACAACTTGCACAGCGAGATGTTCAATCGGTACCGCCCGCAGCTAATGCTCAATAGCTCTCGAAGATCGTCCCAGGAGGAGCCGAAGGCCAAGAAGGTGAAgctggaggtggaggaggaccAGAAGGTACCGTTCAATGTGAAGGCCACGGGCAAGAAGTCGGTGATGTGCCACGTCTGCAGAAAGTTCTTCCCGAACATGAGCGTGCTGTACAAGCACAAGCAGCTCACGCACAACAAGTCCCGcgtggtgaagaacatcgtgaAGGCGACGTTAGCCACCAACGAATGCGTCCCGCTGGCTGGTAACGAGGGCAAGGTCTGCTGCAACATCTGCTACAAGGAGTTCCCCGGCCTCTCGAACCTTCGCCAGCACTTCACCGTGAAACACAAGAACGTCCCGCTCAAGTACGCCTGCCCGGCGACTGGCTGCAAGCTCACGTTCCCCACCCCCGTGGCTTTGAAGAATCACGAGATCACGCATAAAAGCATGATCTGCAATTGCAACCTCTGCGGCCGGCACATGTTCAGCAGATCAGCGATGACGGATCACATGCTCAGGTCCCACAACACTATCTACGACGCGGAGAAGAGCAAAAACTTCCACAGGGAGGCGGACTTGGCCGCGTACGTAGTGCACGGCGCTGTGGACGCCACCTGCCCCGAGTGCAAGATCAAGTATCCCAACAACAAATCTATGAAGATCCACTACTTCAAGTTCCACGAGAACGCCGGCCAGATATAA
- Protein Sequence
- MDEVVELRNMENACRLCLSTDEVKSSVFGMQDSPVSLAAKIQTCLSIQILSTDRLSTQICAQCVRNVNQWHNYKEACLRSQEKLQHWLEKHSQASPMVVTIKDEPVDLDFCEDNIEVISETTIESDLESNTLDHSVNNVESDIHTHVLTDEEADVQKDRPVLTKDTDVSLKPEPQDEYDTDCTIEIESVTGSELVPNPLSNKEDRVMEADSTQKSNTSGSPNKKKIRRGPHTHFRGARVYKQKCVHCQIHLHSKYSYTKHMERFHTEKPNGDTGSAELEDAEELVEDVEDELMSMEKDAPLTQVQQNIISQLKTFSCHSCKQTFNDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYKLHCGASFECAMKIALVVPNHGEEKYFTCNMCLRSMQNRKQLLSHLSKHSDKQYEELISPSRSPPKLKPITPLPSPRREVRKPLPDAPIIPRPYKNGDPAHNHICDLCGMIYRYKPNMFKHRDLCQRLLPEVRTSYKCVHCGMTYLVFKKFHNHITFEHKKRDFACSECNAKFRSPSDFLTHHETHRFARNKKQSLDSQSESGKQALNMPTPIKDWDTFEAEVNAGKIPDGNQYSCALCNLEFATRAELTEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANSSCVEYGSLEEDSRDSATANASATSDPGTNKNECDVCGKVFSNLANVKRHMRNIHQPGIVHVNCTDCSRVFKTKELRDRHVITEHKNKKAMLQCPQCPKSFVFQANLNLHFKTAHSEKPQGGHKCDICGKAFIEEASLKIHRSWHSRVNSRLSIRFRVGEDQKPQIKPQIKPPIKPPIKPPIKQPIKPPIKPPIVPKEEQEFNTSSDRPARARKSFPNPPTSAKPQGNFQCQVCNDKFNDVTELREHLWDVHCARNKTERNFMVNELQCEICTNVFPDKQTLAMHMQWHKAYPILSDIKNPSFPCDVCGKLYSSRKVLMRHKKLHKATSAAAAKCQSETTKSSPSQCMCNVCHKVFSSNQSLQRHKYNLHSEMFNRYRPQLMLNSSRRSSQEEPKAKKVKLEVEEDQKVPFNVKATGKKSVMCHVCRKFFPNMSVLYKHKQLTHNKSRVVKNIVKATLATNECVPLAGNEGKVCCNICYKEFPGLSNLRQHFTVKHKNVPLKYACPATGCKLTFPTPVALKNHEITHKSMICNCNLCGRHMFSRSAMTDHMLRSHNTIYDAEKSKNFHREADLAAYVVHGAVDATCPECKIKYPNNKSMKIHYFKFHENAGQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00086571; iTF_00087373; iTF_00085617; iTF_00088246; iTF_00084736;
- 90% Identity
- iTF_00085617;
- 80% Identity
- -