Afla027067.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Andrena flavipes
Gene Symbol
-
Assembly
GCA_963971345.1
Location
OZ020482.1:51000621-51004857[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2.6 3.3e+02 2.8 7.7 2 23 243 265 242 265 0.96
2 20 0.028 3.5 9.0 4.9 1 23 315 337 315 337 0.98
3 20 0.28 36 5.9 2.1 1 23 386 408 386 408 0.98
4 20 0.029 3.6 9.0 0.3 1 20 462 481 462 483 0.93
5 20 0.00023 0.029 15.6 1.5 1 23 523 545 523 545 0.97
6 20 0.00079 0.1 13.9 0.1 1 23 593 615 593 615 0.97
7 20 0.00076 0.096 14.0 0.1 1 23 621 643 621 643 0.97
8 20 1.5e-06 0.00019 22.5 0.1 2 23 687 709 687 709 0.96
9 20 0.0029 0.36 12.2 0.5 3 23 718 739 716 739 0.95
10 20 6.1e-05 0.0077 17.4 0.2 2 23 747 769 746 769 0.96
11 20 6.2e-05 0.0078 17.4 0.3 1 23 777 799 777 799 0.96
12 20 0.13 16 7.0 0.2 1 20 876 895 876 895 0.96
13 20 0.0014 0.17 13.1 0.1 2 23 915 936 914 936 0.96
14 20 0.00062 0.078 14.2 0.7 1 23 950 972 950 972 0.97
15 20 0.00093 0.12 13.7 4.6 3 23 996 1017 994 1017 0.91
16 20 0.032 4 8.9 2.0 2 23 1069 1091 1068 1091 0.93
17 20 0.0051 0.64 11.4 1.5 3 23 1122 1143 1120 1143 0.92
18 20 0.0011 0.13 13.5 0.0 1 23 1150 1174 1150 1174 0.97
19 20 1.9 2.4e+02 3.3 4.2 2 23 1180 1202 1179 1202 0.94
20 20 0.032 4.1 8.8 1.1 2 23 1232 1254 1232 1254 0.94

Sequence Information

Coding Sequence
ATGGACGAGGTGGTGCAGTTGCGGAACATGGAAAACGCGTGCAGGCTCTGCCTCTCCACCGACGAGGCCAAGTCGTCGGTGTTCGGGATGCAGGACTCCCCGGTATCGTTGGCGGCCAAGATCCAAGCCTGCCTGTCTATCCAGATTTTATCCACGGACAGATTATCGACACAGATATGTACACAGTGTGTTAGGAATGTGAATCAGTGGCACAATTATAAGGAAGCTTGTTTGCGTTCCCAAGAAAAATTGCAGCACTGGTTGGAGAAGCATTTGCAGTCGAGTCCGATGGTTGTAACTATCAAGGACGAGCCTGTGGATCTAGATTTCTGCGAAGATAATATCGAGgttatttcggaaactacCAATGAATCGGACTTGGAGTCGAATACTGTAGATCGCAGTGTAAACAATGTGGGAAGCGATATTCACACTTATGTCCTGACAGACGAGGAAGCGGATGCAGAGAAAAGTCAGCCAGTATTGACGAAAGGTACAAATGTCTCTTTGAAGCCGGAGCCCCAAGACGAGTATGATACCGACTGTACCATAGAAATAGAGTCTGTTACTGGCAGCGAACTCGTACCGAATCCCCTCTCGAATAAAGAAGATAGGGTCATGGAGGCTGATTCTACGCAGAAGTCTAATACGTCTGGCTCGGCAAGTAAAAAGAAGATCAGGCGGGGCCCACACACACACTTCCGAGGGGCTCGTGTCTACAAGCAGAAATGCGTGCACTGTCAGATACATCTGCATTCGAAGTACTCTTACACCAAGCACATGGAGAGATTCCACACGGAGAAGCCAAATGGCGATACTGGATCTGCGGAGCTGGAAGACGCCGAGGAGCTGGTCGAAGATGTGGAGGATGAATTGATGAGTATGGAGAAGGATGCTCCCCTGACGCAAGTACAGCAAAATATTATTAGCCAATTGAAAACGTTCTCCTGCCATTCCTGCAAGCAAACGTTCAACGATCGGAGAAGCACTCTCTCCCACATCCGCCAGCATATGCCCGATCTGAGGCCGTACACGTGTATCGCGTGTTTGACGGAGTTCCCGGATCGATCGATGTACAAGTTACACTGCGGGGCGTCCTTCGAGTGCGCGATGAAAATTGCGTTGGTCGTGCCGAATCACGGTGAGGAGAAGTACTTTACATGTAGCATGTGCCTGCGTTCGATGCAGAATCGAAAGCAATTGCTTAGCCACTTATCGAAACACTCTGACAAACAGTACGAAGAGCTAATCTCCCCGTCGCGATCCCCCCCTAAATTAAAGCCAATAACCCCCCTTCCCTCTCCTAAGCGAGAAGTGAAAAAACCTCTGCCCGATGCTCCGATCATTCCTCGTCCTTACAAAAACGGCGATCCCGCGCACAATCATATCTGCGATCTGTGCGGCATGATATACAGATACAAGCCGAACATGTTCAAGCACAGAGATCTGTGCCAACGTCTGTTACCAGAGGTCCGTACCTCTTACAAGTGTGTCCACTGCGGCATGACCTACCTAGTGTTCAAAAAGTTCCATAATCATATCACCTTCGAGCACAAGAAGAGGGACTTCGCGTGCTCGGAGTGTAACGCCAAGTTCAGATCTCCCAGCGACTTCTTGACCCACCACGAGACGCATCGCTACGACCGCAATAGAAAACATTCCCTAGACTCGCAAAGCGAATCGGGGAAACAGGACCTGAACTCGTCGGGCCCTATCAAAGACTGGGACACGTTCGAGGCGGAGGTGAACGCGGGAAAGATACCGGACGGTAATCAGTACAGTTGCGCCCTGTGCAACTTGGAATTTGCCACGAGGGCAGAACTGACGGAGCACAGGAACCTCCACCTGAAAGTGAAGATCTATTCCTGCGTAATTTGTCGCAGCATGTTCAGCAGCGCGGGTGCCCTGGAGATTCACATGAAGGATCACGGTATAGAGGATCCAAACGAGCGAAACGCGAATAGCTCGTGCGTGGAATACGGCAGCTTGGAGGAAGATTCCCGTGATTCAGCCACGGCGAACGCCAGCGCGACCTCCGACCCCGGCACGAACAAGAACGAGTGCGACGTGTGCGGCAAGGTCTTCTCGAATCTGGCGAACGTCAAGAGACACATAAGGAACATCCACCAGACGGGCATCGTCCACGTCAACTGCACCGACTGTTCGCGCGTGTTCAAGACCAAGGAGTTACGCGACCGGCACGTGATAACCGAGCACAGGAACAAGAGGGCGATGCTCCAGTGTCCCCAATGCCCAAAGAGCTTCGTGTTCCAAGCGAATCTGGACCTGCACTTCAAGACCGCGCACAGCGAGAAGCCACAGGGCGGTCACAAATGCGACATATGCGGAAAGGCGTTCATCGAGGAAGCGTCTCTGAAGATACACAGGAGCTGGCACAGCAGAGTGAACTCGCGGTTGAGCATACGATTCAGAGTTGGCGAGAATCAGAAGCCGCAGATCAAGCCGCAGATCAAGCCGCAGATCAAGTCGCAGATCAAGCCGCCGATCAAGCCGCCGATCGTTCCCAAAGAGGAGCAGCAGGAGTTCAACATCAGCTCCGATCGGCCAGCCAGAGCGCGTAAGTCGTTCCCGAACCCGCCGACCTCCGCGAAGCCGCAGGGCAACTTCCAGTGTCAAGTTTGCAACGACAAGTTCAACGACGTGACAGAGCTGAGAGAACACTTGTGGGACGTTCACTGCGCCCGCAACAAGGCTGAGAGGAATTTCATGGTCAACGAGTTGCAGTGCGAGATCTGCACGAACGTCTTCCCCGACAAACAGACGCTGGCCATGCACATACAGTGGCACAAAGCCTACCCTATCCTCAGCGACATGAAGAACCCAAGCTTCCCGTGCGACGTTTGCGGGAAACTGTACAGCTCGAGAAAGGTGCTGATGAGACACAAGAAGCTCCACAAAGCCACGAGCGCGGCGGCCGCCAAGTGCCAATCGGAGACCACGATGCCCTCGCCCAGCCAATGCCTGTGCGACGTCTGCCACAAGGTGTTCAGCAGCAACCAGTCCCTGCAACGTCACAAGTACAACTTGCACAGCGAGATGTTCAATCGGTTTCGTCCGCAGGTAATGCTCAATAGCTCGCGAAGATCGTCCCAGGAGGAGCCGAAGGCCAAGAAGGTGAAGctggaggtggaggaggaccAGAAGGTACCGTTCACTGTGAAGGCCACGGGCAAGAAGTCGGTGATGTGCCACGTCTGCAGAAAGTTCTTCCCGAACATGAGCGTGCTGTACAAGCACAAGCAGCTCACGCACAACAAGTCCCGCATGGTGAAGAACATCGTGAAGGCGACGTTATCCAGCAACGAATGCGTCCCGCTGGCTGGTAACGAGGGCAAGGTCTGCTGCAACATCTGCTACAAGGAGTTCCCCGGCCTCTCGAACCTTCGCCAGCACTTCACCGTGAAACACAAGAATGTCCCGCTTAAGTACGCCTGCCCGGCGACTGGCTGCAAGCTCACGTTCCCCACCCCGGTGGCTTTGAGGAATCACGAGATCACGCATAAAAGCATGATCTGCAGTTGCAACCTGTGCGGCCGTCACATGTTCAGCAGAACAGCGATGACGGATCACATGCTCAGGTCCCACAACACCATCTACGACGCGGAGAAGAGCAAAAACTTCCACAGGGAGGCGGATTTGGCCGCGTACGTAGTGCACGGCGCTGTGGACGCCACCTGCCCCGAGTGCAAGGTCAAGTATCCCAACAACAAATCCATGAAGATCCACTACTTCAAGTTCCACGAGAACGCCGGCCAGATATAG
Protein Sequence
MDEVVQLRNMENACRLCLSTDEAKSSVFGMQDSPVSLAAKIQACLSIQILSTDRLSTQICTQCVRNVNQWHNYKEACLRSQEKLQHWLEKHLQSSPMVVTIKDEPVDLDFCEDNIEVISETTNESDLESNTVDRSVNNVGSDIHTYVLTDEEADAEKSQPVLTKGTNVSLKPEPQDEYDTDCTIEIESVTGSELVPNPLSNKEDRVMEADSTQKSNTSGSASKKKIRRGPHTHFRGARVYKQKCVHCQIHLHSKYSYTKHMERFHTEKPNGDTGSAELEDAEELVEDVEDELMSMEKDAPLTQVQQNIISQLKTFSCHSCKQTFNDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYKLHCGASFECAMKIALVVPNHGEEKYFTCSMCLRSMQNRKQLLSHLSKHSDKQYEELISPSRSPPKLKPITPLPSPKREVKKPLPDAPIIPRPYKNGDPAHNHICDLCGMIYRYKPNMFKHRDLCQRLLPEVRTSYKCVHCGMTYLVFKKFHNHITFEHKKRDFACSECNAKFRSPSDFLTHHETHRYDRNRKHSLDSQSESGKQDLNSSGPIKDWDTFEAEVNAGKIPDGNQYSCALCNLEFATRAELTEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANSSCVEYGSLEEDSRDSATANASATSDPGTNKNECDVCGKVFSNLANVKRHIRNIHQTGIVHVNCTDCSRVFKTKELRDRHVITEHRNKRAMLQCPQCPKSFVFQANLDLHFKTAHSEKPQGGHKCDICGKAFIEEASLKIHRSWHSRVNSRLSIRFRVGENQKPQIKPQIKPQIKSQIKPPIKPPIVPKEEQQEFNISSDRPARARKSFPNPPTSAKPQGNFQCQVCNDKFNDVTELREHLWDVHCARNKAERNFMVNELQCEICTNVFPDKQTLAMHIQWHKAYPILSDMKNPSFPCDVCGKLYSSRKVLMRHKKLHKATSAAAAKCQSETTMPSPSQCLCDVCHKVFSSNQSLQRHKYNLHSEMFNRFRPQVMLNSSRRSSQEEPKAKKVKLEVEEDQKVPFTVKATGKKSVMCHVCRKFFPNMSVLYKHKQLTHNKSRMVKNIVKATLSSNECVPLAGNEGKVCCNICYKEFPGLSNLRQHFTVKHKNVPLKYACPATGCKLTFPTPVALRNHEITHKSMICSCNLCGRHMFSRTAMTDHMLRSHNTIYDAEKSKNFHREADLAAYVVHGAVDATCPECKVKYPNNKSMKIHYFKFHENAGQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00089015;
90% Identity
iTF_00085617;
80% Identity
-