Afus010994.1
Basic Information
- Insect
- Amblyjoppa fuscipennis
- Gene Symbol
- -
- Assembly
- GCA_963575735.1
- Location
- OY754491.1:19983546-19985882[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00062 0.056 14.3 3.8 1 23 257 279 257 279 0.98 2 15 0.0066 0.61 11.0 4.6 1 23 285 308 285 308 0.98 3 15 0.00012 0.011 16.5 0.8 2 23 405 426 404 426 0.97 4 15 2.3e-06 0.00021 22.0 1.6 1 23 432 454 432 454 0.98 5 15 0.0012 0.11 13.3 0.6 1 23 460 482 460 482 0.97 6 15 3.6e-06 0.00033 21.3 1.3 1 23 497 519 497 519 0.98 7 15 6.7e-06 0.00061 20.5 1.2 3 23 527 547 525 547 0.98 8 15 2.4e-05 0.0022 18.7 1.5 1 23 553 575 553 575 0.97 9 15 0.00082 0.075 13.9 0.2 1 23 581 603 581 603 0.99 10 15 6.2e-06 0.00057 20.6 0.3 1 23 609 632 609 632 0.94 11 15 1.8e-05 0.0017 19.1 1.3 1 23 638 660 638 660 0.98 12 15 0.0004 0.037 14.9 4.7 1 23 666 688 666 688 0.98 13 15 6.1e-06 0.00055 20.6 0.2 1 23 694 717 694 717 0.96 14 15 4.9e-06 0.00045 20.9 0.9 1 23 723 745 723 745 0.97 15 15 3.6e-06 0.00033 21.3 4.5 1 23 751 773 751 773 0.99
Sequence Information
- Coding Sequence
- ATGCGAGAGAAAGATTCAAAGATCTACAATAATCTGTTGATATACGAAGAGCAGTACTCGAAATTCATTATTCTCAGGGCTCTGAGAAGCTCCGATCCCGGGGAGGTGGCCGCCGAGCTAGCCGACATAGTAACGACAATCGGTGCGCCGCGAATAATCCAGAGCGGCAACGGTCGCGAGTACGCGGAGCAAGTCGTGCGGGAGATTCGTACATTGCTGAGGGACTTTTGCGTCGTGCACGGTGACGCCGCGAAAAACGGCGATGCACGCCGAGATATCAAGGGATCGGTGAAATCGTGGATGAAGAAGAACCCCGGAAAATCTTGGCACGAGGCTCTGAAGACACTTCAAGTCGTCGAAAATACATCGATCAATTCGCGAAACGGTGCGATCCCGAGCCAGCTTTTCTTTGGTAGAAATATTTGCGACGATTTGCGAAGAACCATCGGAGGTAAAGGTTCGCTGGGTAATACAGCGTCAGAGGAAGATTCGTTTCCGGCTGTCTCGAGTGTGCGTGATTCGTACGCTTGTTCGAAAAAAGATCGGTGCCAGGTTTCGATCGGCAGAGCCGTGGACATCGCTAGGGAAAACGAGAACGGAGGAAGCATCGAGTGCAGAGAAGAGACCGACGATAAATCGTCGTCAGCGAAGGAAAACGCGAATAGCTTCAATTTCGTGAGCGTCAAGAGCGAGCCGCCGAGCTTAACGGAGCATATCACGGAGCTTCATTCCGACGATGAGGAGCGCATCGACTCCGAAAAATACAACTTCAGATGCAAAATATGCCAGAAGCAATACATGAAGCTCGGTCATTTGAGAAATCACACGAGAGCCCACGCGAAAGTCGAAAACTACGAATGCACGATCTGCTGCAAATCATTCAGACTGTCGAGTCTCTACGACAAGCATATGCAGAGATTTCACGAGGAAGACAAAAACTCGTTGGCCTGTGAGGGCGAACGGTTGGAAGAAAACGAGAAAGACCATGAAAACAACGGAAAGAGGCACAACACAGATGAGAAAATTAGTCGTAAAAGAAGATGTTTGTCAGAAAAATCTAAGCCAATAAAGTCCGTGCCGGGCGAGGAGAAGACATCACCGTCGTTAGCATTGTCGAGGATTTCGTCTAAAAGGCCGTCGAAACGTTCGAACTCCATTTTCAGGAGAAAGCTCAGTAACTCGACGACCAAAGTGAACGGTAATCCACTGCTCGAGTGTGCATACTGTAAGCAAAAATTCAACTTCCCAAGCGTGCTGAAGAGACACGTGCGTTCCCACACGAACGAGAGGCCCTACGTTTGCCAGGTGTGCGGCAAGAGTTTCAAGCAGCTCGGTCACCTGAGCCAGCACTCTCTAACTCACACGGACTATCGTTCGTTCCAGTGCACGATAtgcgaaataaaattcgagTCACTGGACGCCTTCAAGCTTCACTCCCAGTCGCACAAGGACCAAGTTTTTTTCAGGCCCAAGGAGACTTATCGGCTTTTCGAGTGCGACAGTTGCAAGAAGGTATTCACCACGAAGAGCGTTCTCGAGCGTCACATATTCACTCACAGCCACGAGCGCCAATTCGGCTGCAAGGTGTGCGGCAAGAGATTCAAACAAGCGGGTCACGTAAAGTCGCACATGCTCGTGCACACCGGCGAACGAAAGTTCGCCTGTACCGTGTGCTCGAAGAGATTCAGCCTCTCAAATTCGCTGAAGAAGCACATGTACGTTCACAACGGTGAGAAACCGTACCAGTGCGACGTATGCGGCGCGAGATTTCTCGAGAAGCGCAATCTGAACGGTCACCTCATGACACACACGAACGAGCGACCTTTCTCGTGCAAAATTTGCGGCAAGCGTTACACACTGGCGGACACTCTTCGTCGTCACATAAGCGCCGCACACGAGGACGGCCGGACATACCAGTGCGAAATCTGCGCCAAAATGTTCAAGCAACTGGCCCACCTGTCCGTTCACAAGAAAGTCCACAACGACGAGAGACCCTTTCAGTGTCATCTCTGCGAGAAGAATTTCAAGCACAAGAACGTACTAAAGTCCCATCTGGCTATCCACGCCAACGTCAGGCCATTCGAGTGCGACGTGTGCAAAGCCACCTTCGTACGCAAGACCAATCTTCAGACCCACATTGCTTCGGCTCACATGAACGAACGTCCATACGTATGCACAATTTGCAACAAACGCTTCAAGCAGATAAGTCATCTTAACGGTCACATAGTCGTTCACAGCAACTCCATGCCTTATCAGTGCGACTTTTGCGATCGTCGATGCAACAGACTTGATAATCTGAAGAAACACATGAGACTGCATACGAAAAACAAGGAATAg
- Protein Sequence
- MREKDSKIYNNLLIYEEQYSKFIILRALRSSDPGEVAAELADIVTTIGAPRIIQSGNGREYAEQVVREIRTLLRDFCVVHGDAAKNGDARRDIKGSVKSWMKKNPGKSWHEALKTLQVVENTSINSRNGAIPSQLFFGRNICDDLRRTIGGKGSLGNTASEEDSFPAVSSVRDSYACSKKDRCQVSIGRAVDIARENENGGSIECREETDDKSSSAKENANSFNFVSVKSEPPSLTEHITELHSDDEERIDSEKYNFRCKICQKQYMKLGHLRNHTRAHAKVENYECTICCKSFRLSSLYDKHMQRFHEEDKNSLACEGERLEENEKDHENNGKRHNTDEKISRKRRCLSEKSKPIKSVPGEEKTSPSLALSRISSKRPSKRSNSIFRRKLSNSTTKVNGNPLLECAYCKQKFNFPSVLKRHVRSHTNERPYVCQVCGKSFKQLGHLSQHSLTHTDYRSFQCTICEIKFESLDAFKLHSQSHKDQVFFRPKETYRLFECDSCKKVFTTKSVLERHIFTHSHERQFGCKVCGKRFKQAGHVKSHMLVHTGERKFACTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQISHLNGHIVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00058880; iTF_00905571; iTF_01364836; iTF_00059610; iTF_00721431;
- 90% Identity
- iTF_00058880; iTF_01364836; iTF_00059610; iTF_00721431;
- 80% Identity
- -