Aarm007304.1
Basic Information
- Insect
- Amblyteles armatorius
- Gene Symbol
- -
- Assembly
- GCA_933228735.2
- Location
- OW121689.1:10224164-10226782[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0007 0.048 14.1 3.8 1 23 352 374 352 374 0.98 2 15 0.0052 0.36 11.4 4.4 1 23 380 403 380 403 0.98 3 15 6.1e-05 0.0042 17.5 1.4 2 23 499 520 498 520 0.97 4 15 2.6e-06 0.00018 21.8 1.6 1 23 526 548 526 548 0.98 5 15 0.00088 0.061 13.8 0.8 1 23 554 576 554 576 0.97 6 15 4.1e-06 0.00028 21.1 1.3 1 23 591 613 591 613 0.98 7 15 7.6e-06 0.00053 20.3 1.2 3 23 621 641 619 641 0.98 8 15 2.7e-05 0.0019 18.6 1.5 1 23 647 669 647 669 0.97 9 15 0.00093 0.064 13.7 0.2 1 23 675 697 675 697 0.99 10 15 7.1e-06 0.00049 20.4 0.3 1 23 703 726 703 726 0.94 11 15 2.1e-05 0.0015 18.9 1.3 1 23 732 754 732 754 0.98 12 15 0.00046 0.032 14.7 4.7 1 23 760 782 760 782 0.98 13 15 6.9e-06 0.00048 20.4 0.2 1 23 788 811 788 811 0.96 14 15 5.6e-06 0.00038 20.7 0.9 1 23 817 839 817 839 0.97 15 15 4.1e-06 0.00028 21.2 4.5 1 23 845 867 845 867 0.99
Sequence Information
- Coding Sequence
- ATGGATGCAACAGCAGCAATAAGTAGCGAATGGATACCTTCGAAGATCTCACTGGTCCGTGAGCTGCCTGCAATGCCCAATGCTCCTTTTGCCTCTGTGAAGCAAGAGATGCCTCATGTTAACGGAGACGTGAAAAGGCAAGGGATTATAAACAAGGAAAACGAACAGACCGATCCGCGCAGCAAAATTATTTGCTCCGATAACAAGACTGAAACTGCTAAGGGAGCTCACTGTCGTACATCACCGATGAGGATTAATCACCGAGCTCAAATAGACGTTATCGACATGCGAGAGAAAGATTCAAAGAACTACAACAATCTATTGATATACGAAGAGCAATACTCGAAATTCGTTATTCTCAGGGCTCTGAGAAGCTCGGATCCCGGGGAGGTAGCGGCCGAGCTAGCCGACATAGTAACGACGATCGGTGCGCCGCGGATAATTCAGAGTGGCAACGGTCGGGAGTACGCGGAGCAAGTCGTACGGGAGATTCGTACATTGCTGAGGGACTTTTGCGTCGTGCACGGTGACGCCGCGAAAAACAGCGATGTACGCCGAGATCTCAAGGGTTCGGTGGAATTGTGGATGGAGAAGAATCCCGGAAAATTTTGGCACGACGGTCTGAAGACACTTCAAGTCGTCGAAAATACAACGATCAATTCGCGGAACGGCACGATCCCGAGTCAGCTTTTCTTCGGTAGGAATATTTGCGACGATTTGCGGAGAACCATTGGAGGCAAAGGATCGCTGGGTAATACAGCGTCAGAGGAGGATTCGTTGGCGGCTGTCCCGAGTGTGCGTGATTCGTACGCTTGTTCGAAAAAAGATCCATGCCAAGTTTCGATCGGCAGAGCGGTGGACATCGCCAGGGAAAACGAGAATCGCTCCGGAAGCATCGAGTGCAGAGAAGAGACCGATGAATCGTCATCGGTGAAGGAAAACGCGAGTAGCTTCAATGCCGTGAGCGTCAAGAGCGAGCCGCCGAGCGTAACGGAACACATCACGGAGCTTCATTCCGACGAGGAGGAGCGCATTGACTCTGAAAAATACAACTTCAGATGCAAAATATGCCAGAAGCAATACATGAAGCTCGGTCATCTGAGAAATCACACGAGAGCCCACACAAGAGTCGGAAACTACGAATGTACGATCTGCTGCAAATCTTTCAGACTTTCGAGTCTCTACGATAGGCATATGCAGAGATTTCACGACGACGACAAAAACCTGACCGCCGGTGGGCGCGAACGGTTGGAAGAAAACGAGAGGGACCATGAAAGTAACGAGaaagggaataaaaaagatgAGAAAGTTAGTCGTAAGAGAAGATGTATGTCGGAAAAATCGAAGCCAATCAAGCCTGGCGAGGAAAAGACATCACCTTCGTCTCTAGGACTGTCGAGGATTTCGTCGAAAAGGTCGTCGAAACGTTCGAACTCCGTTTTCAGGAGAAAGCTCGGTAACTCGACGACCAAAGTAAACGGTAATCCTCTGCTCGAATGTACATACTGCAAGCAAAAATTCAACTTCCCTAGCGTACTGAAGAGACACGTGCGTTCCCACACGAACGAGAGGCCCTACGTTTGCCAGGTGTGCGGCAAGAGTTTCAAGCAGCTCGGTCACCTGAGCCAGCACTCGCTCACTCACACGGACTATCGTTCGTTCCAGTGCACGATGTGCGACATAAAATTCGAGTCGCTCGACGCCTTCAAGCTTCACTCCCAGTCCCACAAGGACGAAGCTTTTTTCAGGACCAAAGAGACTTATCGGCTTTTCGAGTGCGATAGTTGCAAGAAGGTATTCACCACGAAGAGCGTTCTCGAGCGTCATATATTCACTCACAGCCACGAGCGCCAGTTTGGCTGCAAGGTGTGCGGCAAGAGATTCAAACAAGCGGGTCACGTCAAGTCGCACATGCTCGTGCACACCGGCGAACGAAAGTTCGCCTGTACCGTGTGCTCGAAGAGATTCAGCCTCTCGAATTCGCTCAAGAAACACATGTACGTTCACAACGGTGAGAAACCGTACCAGTGCGACGTGTGCGGTGCGAGATTCCTCGAAAAGCGTAATCTCAACGGTCACCTCATGACCCACACGAACGAGAGACCTTTTTCGTGCAAAATTTGCGGCAAGCGCTACACACTAGCGGACACTCTTCGTCGTCACATAAGCGCCGCGCACGAGGACGGTCGGACATACCAGTGCGAAATCTGCGCGAAAATGTTCAAGCAACTGGCACACCTGTCGGTTCACAAGAAGGTCCACAACGACGAGAGACCCTTTCAGTGTCATCTCTGCGAGAAGAATTTCAAGCACAAGAACGTACTCAAGTCACATCTGGCTATCCACGCCAACGTCAGGCCCTTCGAGTGCGACGTGTGCAAAGCCACCTTCGTACGTAAGACCAACCTTCAGACCCACATAGCTTCCGCTCACATGAACGAACGTCCGTACGTATGTACGATCTGCAACAAACGCTTTAAGCAGATAAGTCATCTGAACGGTCACATAGTAGTTCACAGTAACTCCATGCCTTATCAATGCGATTTTTGCGATCGTCGATGCAACAGACtcgataatttgaaaaaacacaTGAGACTGCACACGAAAAACAAGGAGTAG
- Protein Sequence
- MDATAAISSEWIPSKISLVRELPAMPNAPFASVKQEMPHVNGDVKRQGIINKENEQTDPRSKIICSDNKTETAKGAHCRTSPMRINHRAQIDVIDMREKDSKNYNNLLIYEEQYSKFVILRALRSSDPGEVAAELADIVTTIGAPRIIQSGNGREYAEQVVREIRTLLRDFCVVHGDAAKNSDVRRDLKGSVELWMEKNPGKFWHDGLKTLQVVENTTINSRNGTIPSQLFFGRNICDDLRRTIGGKGSLGNTASEEDSLAAVPSVRDSYACSKKDPCQVSIGRAVDIARENENRSGSIECREETDESSSVKENASSFNAVSVKSEPPSVTEHITELHSDEEERIDSEKYNFRCKICQKQYMKLGHLRNHTRAHTRVGNYECTICCKSFRLSSLYDRHMQRFHDDDKNLTAGGRERLEENERDHESNEKGNKKDEKVSRKRRCMSEKSKPIKPGEEKTSPSSLGLSRISSKRSSKRSNSVFRRKLGNSTTKVNGNPLLECTYCKQKFNFPSVLKRHVRSHTNERPYVCQVCGKSFKQLGHLSQHSLTHTDYRSFQCTMCDIKFESLDAFKLHSQSHKDEAFFRTKETYRLFECDSCKKVFTTKSVLERHIFTHSHERQFGCKVCGKRFKQAGHVKSHMLVHTGERKFACTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQISHLNGHIVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00058119;
- 90% Identity
- iTF_00058119;
- 80% Identity
- -