Apro015341.1
Basic Information
- Insect
- Amblyjoppa proteus
- Gene Symbol
- -
- Assembly
- GCA_963922035.1
- Location
- OY998233.1:8572272-8574893[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0007 0.067 14.1 3.8 1 23 352 374 352 374 0.98 2 15 0.0076 0.73 10.9 4.6 1 23 380 403 380 403 0.98 3 15 0.00014 0.014 16.3 0.8 2 23 500 521 499 521 0.97 4 15 2.6e-06 0.00025 21.8 1.6 1 23 527 549 527 549 0.98 5 15 0.0014 0.14 13.2 0.6 1 23 555 577 555 577 0.97 6 15 4.1e-06 0.00039 21.1 1.3 1 23 592 614 592 614 0.98 7 15 7.6e-06 0.00073 20.3 1.2 3 23 622 642 620 642 0.98 8 15 2.7e-05 0.0026 18.6 1.5 1 23 648 670 648 670 0.97 9 15 0.00093 0.089 13.7 0.2 1 23 676 698 676 698 0.99 10 15 7.1e-06 0.00068 20.4 0.3 1 23 704 727 704 727 0.94 11 15 2.1e-05 0.002 18.9 1.3 1 23 733 755 733 755 0.98 12 15 0.00046 0.044 14.7 4.7 1 23 761 783 761 783 0.98 13 15 6.9e-06 0.00066 20.4 0.2 1 23 789 812 789 812 0.96 14 15 5.6e-06 0.00053 20.7 0.9 1 23 818 840 818 840 0.97 15 15 4.1e-06 0.00039 21.1 4.5 1 23 846 868 846 868 0.99
Sequence Information
- Coding Sequence
- ATGGATGCAACAGCAGCAATAAGTAGCGAATGGATTCCTTCAAAAATCTCGCTGGTCCACGAGTTGCCTGCAACGCCTAATGCTCCTTTTGCCTCTGTGAAGCAGGAGATGCCTCATCTTAATGGAGATGCGAACAGGCAAGCGATGATTAACAAGGAAAAGGAACAGACTGATCCGCGcagcaaaataatttcttcTGGTAACAAGACTGAAACAGCTAACGGAGCTCACAGTCGTTTATCACCGATGAGGATAAATCACCGAGCCCAAATAGACGTTATTGATATGCGAGAGAAAGCTTCAAAGATCTACAATAATCTGTTGATATACGAAGAGCAGTACTCGAAATTCGTTATTCTCAGGGCTCTGAGAAGCTCCGATCCCGGGGAGGTGGCCGCCGAGCTAGCCGACATAGTAACGACAATCGGTGCGCCGCGAATAATCCAGAGCGGCAACGGTCGCGAGTACGCGGAGCAAGTCGTGCGGGAGATTCGTACATTGCTGAGGGACTTTTGCGTCGTGCACGGTGACGCCGCGAAAAACGGCGATGCACGCCGAGATCTCAAGGGATCGGTGAAATCGTGGATGAAGAAGAACCCCGGAAAATCTTGGCACGAGGCTCTGAAGACACTTCAAGTCGTCGAAAATACATCGATCAATTCGCGAAACGGTGCGATCCCGAGCCAGCTTTTCTTCGGTAGAAATATTTGCGACGATTTGCGAAGAACCATCGGAGGTAAAGGTTTGCTGGGTAATACAGCGTCAGAGGAAGATTCGTTTCCGGCTGTCTCGAGTGTGCGTGATTCGTACGCTTGTTCGAAAAAAGATCTGTGCCAGGTTTCGATCGGCAGAGTCGTGGACATCGCTAGGGAAAACGAGAACGGAGGAAGCATCGAGTGCAGAGAAGAGACCGACGATAAATCGTCGTCAGCGAAGGAAAACGCGAATAGCTTCAATTTCGTGAGCGTCAAGAGCGAGCCGCCGAGCTTAACGGAGCATATCACGGAGCTTCATTCCGACGATGAGGAGCGCATCGACTCCGAAAAATACAACTTCAGATGCAAAATATGCCAGAAGCAATACATGAAACTCGGTCATCTGAGAAATCACACGAGAGCCCACGCGAAAGTCGGAAACTACGAATGCACGATCTGCTGCAAATCATTCAGACTGTCGAGTCTTTACGACAAGCATATGCAGAGATTTCACGAGGAAGACAAAAACTCGTCGGCCTGTGAGGGCGAACGGTTGGAAGAAAACGAGAAAGACCATGAAAACAACGGAAAGAGGCACAACACAGATGAGAAAATTAGTCGTAAAAGAAGATGTTTGTCAGAAAAATCTAAGCCAATAAAATCCGTGCCGGGCGAGGAGAAGACATCACCGTCGTTAGCATTGTCGAGGATTTCGTCTAAAAGGCCGTCGAAACGTTCGAACTCCATTTTCAGGAGAAAGCTCAGTAACTCGACGACCAAAGTGAACGGTAATCCACTGCTCGAGTGTGCATACTGTAAGCAAAAATTCAACTTCCCAAGCGTGCTGAAGAGACACGTGCGTTCCCACACGAACGAGAGGCCCTACGTTTGCCAGGTGTGCGGCAAGAGTTTCAAGCAGCTCGGTCACCTGAGCCAGCACTCTCTAACTCACACGGACTATCGTTCGTTCCAGTGCACGATAtgcgaaataaaattcgagTCACTGGACGCCTTTAAGCTTCACTCCCAGTCGCACAAGGACCAAGTTTTTTTCAGGCCCAAGGAGACTTATCGGCTTTTCGAGTGCGACAGTTGCAAGAAGGTATTCACCACGAAGAGCGTTCTCGAGCGTCACATATTCACTCACAGCCACGAGCGCCAATTCGGCTGCAAGGTGTGCGGCAAGAGATTCAAACAAGCGGGTCACGTAAAGTCGCACATGCTCGTGCACACCGGCGAACGAAAGTTCGCCTGTACCGTGTGCTCGAAGAGATTCAGCCTCTCGAATTCGCTGAAGAAGCACATGTACGTTCACAACGGTGAGAAACCGTACCAGTGCGACGTATGCGGCGCGAGATTTCTCGAGAAGCGCAATCTGAACGGTCACCTCATGACACACACGAACGAGCGACCTTTCTCGTGCAAAATTTGCGGCAAGCGTTACACACTGGCGGACACTCTTCGTCGTCACATAAGCGCCGCACACGAGGACGGCCGGACATACCAATGCGAAATCTGCGCCAAAATGTTCAAGCAACTGGCCCACCTGTCCGTTCACAAGAAAGTCCACAACGACGAGAGACCCTTTCAGTGTCATCTCTGCGAGAAGAATTTCAAGCACAAGAACGTACTAAAGTCCCATCTGGCTATCCACGCCAACGTCAGGCCATTCGAGTGCGACGTGTGCAAAGCCACCTTCGTACGCAAGACCAATCTTCAGACCCACATTGCTTCGGCTCACATGAACGAACGTCCATACGTATGCACAATTTGCAACAAACGCTTCAAGCAGATAAGTCATCTTAACGGTCACATAGTCGTTCACAGCAACTCCATGCCTTATCAGTGCGACTTTTGCGATCGTCGATGCAACAGACTTGATAATCTGAAGAAACACATGAGACTGCATACGAAAAACAAGGAATAG
- Protein Sequence
- MDATAAISSEWIPSKISLVHELPATPNAPFASVKQEMPHLNGDANRQAMINKEKEQTDPRSKIISSGNKTETANGAHSRLSPMRINHRAQIDVIDMREKASKIYNNLLIYEEQYSKFVILRALRSSDPGEVAAELADIVTTIGAPRIIQSGNGREYAEQVVREIRTLLRDFCVVHGDAAKNGDARRDLKGSVKSWMKKNPGKSWHEALKTLQVVENTSINSRNGAIPSQLFFGRNICDDLRRTIGGKGLLGNTASEEDSFPAVSSVRDSYACSKKDLCQVSIGRVVDIARENENGGSIECREETDDKSSSAKENANSFNFVSVKSEPPSLTEHITELHSDDEERIDSEKYNFRCKICQKQYMKLGHLRNHTRAHAKVGNYECTICCKSFRLSSLYDKHMQRFHEEDKNSSACEGERLEENEKDHENNGKRHNTDEKISRKRRCLSEKSKPIKSVPGEEKTSPSLALSRISSKRPSKRSNSIFRRKLSNSTTKVNGNPLLECAYCKQKFNFPSVLKRHVRSHTNERPYVCQVCGKSFKQLGHLSQHSLTHTDYRSFQCTICEIKFESLDAFKLHSQSHKDQVFFRPKETYRLFECDSCKKVFTTKSVLERHIFTHSHERQFGCKVCGKRFKQAGHVKSHMLVHTGERKFACTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQISHLNGHIVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00058119;
- 90% Identity
- iTF_00058119;
- 80% Identity
- -