Basic Information

Insect: Agrotis segetum
Gene Symbol: -
Assembly: GCA_036375495.1
Location: JAQSVV010000142.1:894411-907356[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.96 87 4.8 1.5 1 23 216 239 216 239 0.94

2 17 4.7 4.2e+02 2.7 0.3 3 10 278 285 277 288 0.89

3 17 1.7 1.5e+02 4.1 0.5 5 19 303 317 302 318 0.92

4 17 0.023 2.1 9.9 0.2 1 22 331 352 331 354 0.91

5 17 0.0042 0.38 12.3 2.2 2 21 392 411 392 414 0.94

6 17 2.4 2.2e+02 3.6 4.3 1 23 418 440 418 440 0.94

7 17 0.81 73 5.1 2.7 1 20 663 681 663 683 0.90

8 17 1.5 1.3e+02 4.2 3.1 1 23 696 718 696 718 0.93

9 17 0.077 6.9 8.3 0.3 2 23 724 745 723 745 0.96

10 17 0.93 83 4.9 0.6 1 20 768 786 768 789 0.71

11 17 0.28 25 6.5 7.7 2 23 829 850 828 850 0.95

12 17 0.0037 0.33 12.4 0.2 2 23 866 887 865 887 0.96

13 17 5.8e-07 5.2e-05 24.4 2.7 1 23 893 915 893 915 0.99

14 17 4.3e-05 0.0038 18.5 0.3 3 23 922 942 920 942 0.96

15 17 7.5e-05 0.0067 17.8 1.3 2 23 949 971 948 971 0.96

16 17 0.31 28 6.4 0.2 1 20 978 997 978 1001 0.94

17 17 0.0011 0.097 14.1 0.6 3 23 1010 1031 1009 1031 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.96	87	4.8	1.5	1	23	216	239	216	239	0.94
2	17	4.7	4.2e+02	2.7	0.3	3	10	278	285	277	288	0.89
3	17	1.7	1.5e+02	4.1	0.5	5	19	303	317	302	318	0.92
4	17	0.023	2.1	9.9	0.2	1	22	331	352	331	354	0.91
5	17	0.0042	0.38	12.3	2.2	2	21	392	411	392	414	0.94
6	17	2.4	2.2e+02	3.6	4.3	1	23	418	440	418	440	0.94
7	17	0.81	73	5.1	2.7	1	20	663	681	663	683	0.90
8	17	1.5	1.3e+02	4.2	3.1	1	23	696	718	696	718	0.93
9	17	0.077	6.9	8.3	0.3	2	23	724	745	723	745	0.96
10	17	0.93	83	4.9	0.6	1	20	768	786	768	789	0.71
11	17	0.28	25	6.5	7.7	2	23	829	850	828	850	0.95
12	17	0.0037	0.33	12.4	0.2	2	23	866	887	865	887	0.96
13	17	5.8e-07	5.2e-05	24.4	2.7	1	23	893	915	893	915	0.99
14	17	4.3e-05	0.0038	18.5	0.3	3	23	922	942	920	942	0.96
15	17	7.5e-05	0.0067	17.8	1.3	2	23	949	971	948	971	0.96
16	17	0.31	28	6.4	0.2	1	20	978	997	978	1001	0.94
17	17	0.0011	0.097	14.1	0.6	3	23	1010	1031	1009	1031	0.95

Sequence Information

Coding Sequence: ATGGCGGATACATCGAGGAAAAGGTCGAGAAAATCGAAGTTAGTGCCTCGAGAGTGTTCTTTGTACGAAGATGATCTTGAATTGCAGcttcCAGATTTAAAGGTATTCAGAGCGACTATTCCTCAGCAACCTACTgctaaacaacaaaaaacagtCAACAAGCCAGTTAAACCTCCGGAAAGTACAATTACAAAACCATTGGAAGATAAACTACAAGAAGTAGACACGAGCGTCTTGAGGAAAATCAATGCAGCAACCAAAGAAGatgtagaaccaaaaattaagATATCACCAAGAAAATTCGAAATAAATATAGAAGTAGAAtcatgtgatgatgatgatgacgaatttGCAAGCATTAGAATTGAAAATAGCTTGACCACACCAGGTGAAGATATACTAAGTGCACCACGTACAAAACCTATACCTCTCTGGAGAGAACACATACTGGAAGCTGCAGGTACCATACTTGAAACTTCTACAGAAGCTGCTGATAAAATCTTAAGCATATACGTAAGAAATACTATAGGAGAGGAGCTGCAAGAAAAACTAAAGACAACAGTATATGAGGCCAAAATCCAGCAAGCTCTAGAAGATTGGAGAGAATGGCAATATCGCAGTTTCCACCGCGAAGACCCTTTGTTCTACAAATGCTACATTTGTACTAAATCATGGTGGtttttgtcagattttcgtaaccATATGTCTTCACAACACCCTAATGATcaaaaagtcaaaattattaTGGAAATATATGAGTCCCACGAAGTAAATTTGGCagtgcataaaaaaaaacttcttgtgATCAAAGATATAGACACTGAGGGTCCTTGCCATCGCTGCGGCAAAGACTTTGCTGCTCATGAGATAGCACGGAGAGATCAGGGGAAATATTACAGAAATAAAGGATGTGATAAACAGTTTTTTACCTGCAAGGGTCTAAGAGATCACGTTCCATCGTGTCCTGTTTGTAACGTAGAAAATAAGGCTTTCAAATGTGAAATTTGCAAGTCAAAATTTGATACTGTAATAGAATTGAACAATCACTTGGTTGGGTCTCACTCAGTTCGTTCCGATATTCCTATAATGGGTTACTACGATATTTGCTATAAGTGTTCGGGGAAATATTCTTCCAAATATCTGCATAAATGCTTACAAAGAGGACCACATAGGGAATGCCCTAACTGCTTTAGGACCTTCTCAAATCCTAAATTGTTGGAACTACATTTGAAGTGTACACATAATAAGCCATACAAATGTGAAATTTGCAATAAATTTATGAAATACAGCTGTAGTAAGTACGAGCATATGTTGGAACATACTGATAGATACATGATTGTAAGGAAATGTGTTAAATGTGATGGGTTGAATGTATTTCTGAACAATGATGATGCTGCAGCACACACTGAGTTGACACATGAGCAAAAGGAAACCGTGGAACAGATATATTTTCCTAAAattctGGTACCGTCATCTTGTGTATATCACAGCTTAGCTGAATCTGAGATGGAGGAAGAAGAATCGTTGGTCGAGGAAGAATTAATGCTGCAGGGCAAAGAACTGGAGACAACGGCTGAACAGCAGACTGTGGCAGAAATATTGATGAACAATGTTGTAGttaaagAAGAACCACCTGACACAGAAGATAGCCCAGCTCTAGTAATCAAAGAAGAACCGGCAGAAGAAATAGAGAATCAAACAGAAGACAACTTTGACCACGAAATTAAAGTAAAAGAAGAAATTTTAGAAGCGGAAGAAGATATAGATGAATATGAGGACGATCTAATTAAACTAAACTTTGATATAGAAGATTTGTTGgtgaagcaagaatatatgggTGATGAAACAGAATATTCACAAGACACATCACAAATGCAAACAGATGATGATACCCAAGAGTTCCCTCAACCAATCAAAGAAGAAACTGCAAATTCAGTTCTAGAacctcaaataataatattagggggcaaaaaaaagaagaatttataTAAATGTACTAAGTGTGGTTTCACATCGAACCACAGACAATATAGATCGCATATAGAATTTGATTGCCCCAAAAGTTTCATGAAACGGAATAAGCATTATTTCTGCACAAAATGTAATAATACATACAAGTCGATGAAAAAGTATTTGGCACATTTTGAGTTGCACGGTTACAAGCATAAGAGCTGCCCGGAATGTTTGTATgaatttgataattataatgcttTGGGGCATCACGTACAAGTGCATATAAAACAGAATTTTGTGCGTATAAAGTTGATTACACATGCAGgcAAAGCGATGGTAAATCCGGACTTTCAGTGTAAGAAATGTAACAAGACGATAGCGTTAGATGAATTCTTTGAGCATTGGGAGTCTcatatcaacgcacagcccacaCATCCAATGAAAGTCAGGGCCGGGCCTTCTTTAAAACGTGGTGAATTACAACAAACCATTATAAAAGAATGCATTGCTCGTCTCTCCAAAAACCCAAAGGAATGCAACCATTGTCACCGTACGTTTAAACGGGTAAACGAATGCAAACGTCATATTATAGAACATCTACTCGCAGATGCTTACACCCAGAAACACATACTACTAGAATTGAGATGCCAGATCTGCGAAGCCGGATTTCCGGTCCAGGAAAAATATAAACAGCATATGCGAGACCATGCATCTTTACCTGTGTATAAATGTGAATTGTGTGATAGAACATTCAGTGATTCAAGTAATTTtaccaaacataaaaaagtgCATAATTTAAAAGTGATAATTTGTGATCTGTGTGGCAAGAAGTTTCAGTCGAAGGTGTCTTTGGAGAAACATATTGatAAACACAAAACCACTGCTCCAATCACGTGCGAGCTATGCAACAAAGTCTTTTACTTCGAGAGCTCATACCGACGGCACATCAGATATTTCCACGAAAAAACCACTCATGGTTTCCGTTGCATGAATTGTGGAGCCCGTTTTGAgagcttaaaacaaaaatgggACCATATGTGGTTGGTACATCATGAGAGGAAACAAAAAGCTGATTGCCCAATATGCCATGAATCCTTCAGAAAGTTTTCTGATGTTAGAGCCCATGCACGGGCAACTCATTACATGGAAGTGTCCGTGTTGAGTGTGAAGCGGGCAAGTGAACGTAATACCATGGTCATTGATAAGTTTTTGGGGGAAACTGCTAAAATTAAGGTTGGTAAGAAGGAGACTTTGATTGTTTATGATGCTGATTGA
Protein Sequence: MADTSRKRSRKSKLVPRECSLYEDDLELQLPDLKVFRATIPQQPTAKQQKTVNKPVKPPESTITKPLEDKLQEVDTSVLRKINAATKEDVEPKIKISPRKFEINIEVESCDDDDDEFASIRIENSLTTPGEDILSAPRTKPIPLWREHILEAAGTILETSTEAADKILSIYVRNTIGEELQEKLKTTVYEAKIQQALEDWREWQYRSFHREDPLFYKCYICTKSWWFLSDFRNHMSSQHPNDQKVKIIMEIYESHEVNLAVHKKKLLVIKDIDTEGPCHRCGKDFAAHEIARRDQGKYYRNKGCDKQFFTCKGLRDHVPSCPVCNVENKAFKCEICKSKFDTVIELNNHLVGSHSVRSDIPIMGYYDICYKCSGKYSSKYLHKCLQRGPHRECPNCFRTFSNPKLLELHLKCTHNKPYKCEICNKFMKYSCSKYEHMLEHTDRYMIVRKCVKCDGLNVFLNNDDAAAHTELTHEQKETVEQIYFPKILVPSSCVYHSLAESEMEEEESLVEEELMLQGKELETTAEQQTVAEILMNNVVVKEEPPDTEDSPALVIKEEPAEEIENQTEDNFDHEIKVKEEILEAEEDIDEYEDDLIKLNFDIEDLLVKQEYMGDETEYSQDTSQMQTDDDTQEFPQPIKEETANSVLEPQIIILGGKKKKNLYKCTKCGFTSNHRQYRSHIEFDCPKSFMKRNKHYFCTKCNNTYKSMKKYLAHFELHGYKHKSCPECLYEFDNYNALGHHVQVHIKQNFVRIKLITHAGKAMVNPDFQCKKCNKTIALDEFFEHWESHINAQPTHPMKVRAGPSLKRGELQQTIIKECIARLSKNPKECNHCHRTFKRVNECKRHIIEHLLADAYTQKHILLELRCQICEAGFPVQEKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVIICDLCGKKFQSKVSLEKHIDKHKTTAPITCELCNKVFYFESSYRRHIRYFHEKTTHGFRCMNCGARFESLKQKWDHMWLVHHERKQKADCPICHESFRKFSDVRAHARATHYMEVSVLSVKRASERNTMVIDKFLGETAKIKVGKKETLIVYDAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00040273; iTF_00043040; iTF_00041300; iTF_00042168;
90% Identity: iTF_00040273;
80% Identity: -