Aips025599.1
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- -
- Assembly
- GCA_028554685.1
- Location
- CM052983.1:3078415-3092884[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.9 1.9e+02 3.7 1.7 1 23 216 239 216 239 0.90 2 12 0.0037 0.37 12.3 0.6 1 23 331 354 331 354 0.95 3 12 4.3 4.4e+02 2.6 0.3 3 14 369 380 367 381 0.88 4 12 0.0032 0.32 12.5 1.4 2 23 392 414 392 414 0.96 5 12 2 2e+02 3.7 4.3 1 23 418 440 418 440 0.94 6 12 0.49 49 5.6 1.3 1 23 676 697 676 697 0.82 7 12 0.0026 0.26 12.8 0.2 2 23 774 795 773 795 0.96 8 12 4.6e-07 4.7e-05 24.6 2.7 1 23 801 823 801 823 0.99 9 12 3.6e-05 0.0036 18.6 0.5 3 23 830 850 828 850 0.96 10 12 0.00017 0.017 16.5 1.3 2 23 857 879 856 879 0.96 11 12 0.25 25 6.5 0.2 1 20 886 905 886 909 0.94 12 12 0.00087 0.088 14.3 0.6 3 23 918 939 917 939 0.95
Sequence Information
- Coding Sequence
- ATGGCGGAAACATCGAGGAAAAGGTCGAGAAAATCGAAGTTAGTGCCTCGAGAGTGTTCTTTGTACGAAGATGATCTTGAATTGCAGCTTCCAGATTCAAAAGTATTCAGAGCGACTATTCCCCAACAGCCTAGTGCTAAACTACAAAAAACAGTCGAGAAACCAGTTAAACCTCCCGAAAGTACAATTACAAAACCGATAGAAGCTAAAATACAAGAAGTAGACACAAGCGTCTTGAGAAAAATCAACGCCTCGGCCAAAGAAGATGTGGAACCAAAAATAAAGATATCACCAAGAAAATTTGAGATTAATATCGAAGTAGAATcttgtgatgatgatgacgatgaattTGCAAGCATTAGGATTGAGAATAGCTTGACAACACCTGGTGATGACATACTAAGTGCACCACGCACCAAACCTATAACTCTCTCTCGAGAACGTATACTTGAAGCTGCGAACAACATACTAGAAACTTCCACAGAATCTGCTGATAGAATCTTAAGCAtatacgttaaaaatactaTAGGAGAAGAGCAGGAAGAAAAACTAAATGCAACAGGATATGATTTCAAAATCCAACGAGCCTTAGAAGATTGGAGAGACTGGCAATACCGCAGTTTCCACCGTGAAGACCCTTTATTCTACAAATGCTACATCTGTACTAAATCTTGGTGGTTTCTGTCAGAGTTCCGTAACCATATGTTTTCTCAACATCCTAATGATGAAAAAGTCAAAATTATTATGGAAATGTACGAGTCCCACGAAGTCAATTTGATAGCGTATCAAAGTAAACTTCTTGTGGTTGAAGACATACGGACTAAAGGTCTGTGTCATCGCTGCGGCAAAGACTATGCTGCTCATAAGTTATCAGGCAGAGATCAGGGGAAATTTTACAGCAATAAAGGTTGTTATAAACAATTTTTCAGCTGCATGGGTCTACGAGATCACTTGCCATCTTGTCCCGTTTGTAACGTAGAAAATAAGCCATTCAAATGTGATATTTGCAAATCAAGATTTGATACCGTATATGAACTGAACGATCACTTAGTTCGGTCTCACTCAGTTCGGTCCGATATTCCTATAATGGGTCACTACGATATTTGCAATAAGTGTTCGGAGAAATATTCTACTAATTATCTGcataaatgtttacaaatgGGCCCACATAGGGAATGCCCTAATTGCTTTAGGACGTTCTCTAATACCAAATTGATGGAGCTCCATTTAAAGCGTTCACATAACAAGCCATACAAATGTGaaatttgtaataaatttatGAAATATAGCTGTAGTAAGTACGAGCATATGTTGGAACATACTGATAGATACATAATTGTGAGGAAATGTGTTAAATGTGATGGCTTGAATGTTTTCCTGAATAATGATGACGCTATGGCTCACACTGAGTTGAAACATGAGCAAATGCATAAGGTGGAACAGATATATTTTCCTAAAattcttgTACCCTCCTCTTGTGTATATCAAAGCTTAGCGGAATCGGAAATGGAGGAAGAGGAGTCTTTAGTTGAGGAGGAGGAATTGATCCTGGAGGCCAAAGAATTGGAGCCAACGTCTGAAATACAAAAAACTGCAGAAGAATTTATGATGAATAATATTGTTGTCAAAGAAGAACCACCGGACCTAGAAGACACCCCTGCGCTAGTAATCAAAGAAGAGCCGACAGAAGAAATAGAGAAAGAAGCAGAAGAACAACAAATGGAGAACTTTGACCACGAAATAAGAGTAAAAGAAGAGATCTTAGAAGGAGAAGCAGAGGAAGAAATTGATGAATACGAAGATGACTTAATCAAACTTAACTTTGATATTGAAGATTTGTTAGTAAAGCAAGAAAATATGGACGATGAGACAGAATACTCCCAAGATACATCAGAAATGCCaacagatgatgataattctCAAGAATTCCCTCAACCTATTAAATTAGAAGGTGACGCTGATGTACCATCAATTCTAGAACCTCACATAATACTATTAGGaggtAAAGCGATGATAAAACCAGATTTTCAGTGCAAGAAATGTAACAAGACAATATCGTTAACTGGATTCTTTGAACACTGGGAGTCTCACATCAATGCCCAGCCTACCCACCCAATGAAAGTGCGGTCCGGGCCTTCCATTAGAAGAGGAGAATTACAACAAACTATCATTAAAGAATGCATTGCCCGCCTCTCCAACAACCCAAAAGAATGCAACCACTGTCACCGCTGGTTCAAAAGAGTGAACGAATGCAAACGTCATATCATAGAGCATCTCCTCGCAGACGCTTACAACCAGAAACACGTCCTCCATGAATTAAGATGCCAGATCTGTGAAGCCGGATTTGCTGTCCAGGAAAAATACAAACAACACATGCGGGATCATGCGTCGTTGCCCGTGTATAAGTGTGAACTGTGTGATAGGACTTTTAGTGATTCAAGtaattttacaaaacataaaaaagtgcaTAATTTGAAAGTGATTATTTGTGATTTGTGCGGCAAGAAATTTCAGTCGAAGATGTCTTTGGAAAAGCATATTGAGAAACACCAATCCACAGCCCCAATAACCTGCGAGCTATGCAACAAGATCTTCTATTTCGAGAGCTCCTACCGTCGCCACATCAGATATTTCCACGAGAAAACAACCCATGGTTTCCGTTGCATGAACTGTGGAGCCCGTTTtgatagcctaaaacaaaaATGGGACCATATGTGGTTGGTTCACAAGGAGAGAAAGCAGAAGGCTGACTGTCCTATATGCCATGAGTCGTTCAGAAAGTTCTCCGATGTCAGGGCCCATGCTCGAGCAACGCATTATATGGAAGTGTCCGTGCTGAGTGTGAAACGAGCTAGCGGACCTAATACAACGGTTATTGATAAGTTTCTCGGAGAGACTACTAAGATTAAGGTTGGTAAAAAGGAGACTTTGATTGTTTATGATGCTGATTGA
- Protein Sequence
- MAETSRKRSRKSKLVPRECSLYEDDLELQLPDSKVFRATIPQQPSAKLQKTVEKPVKPPESTITKPIEAKIQEVDTSVLRKINASAKEDVEPKIKISPRKFEINIEVESCDDDDDEFASIRIENSLTTPGDDILSAPRTKPITLSRERILEAANNILETSTESADRILSIYVKNTIGEEQEEKLNATGYDFKIQRALEDWRDWQYRSFHREDPLFYKCYICTKSWWFLSEFRNHMFSQHPNDEKVKIIMEMYESHEVNLIAYQSKLLVVEDIRTKGLCHRCGKDYAAHKLSGRDQGKFYSNKGCYKQFFSCMGLRDHLPSCPVCNVENKPFKCDICKSRFDTVYELNDHLVRSHSVRSDIPIMGHYDICNKCSEKYSTNYLHKCLQMGPHRECPNCFRTFSNTKLMELHLKRSHNKPYKCEICNKFMKYSCSKYEHMLEHTDRYIIVRKCVKCDGLNVFLNNDDAMAHTELKHEQMHKVEQIYFPKILVPSSCVYQSLAESEMEEEESLVEEEELILEAKELEPTSEIQKTAEEFMMNNIVVKEEPPDLEDTPALVIKEEPTEEIEKEAEEQQMENFDHEIRVKEEILEGEAEEEIDEYEDDLIKLNFDIEDLLVKQENMDDETEYSQDTSEMPTDDDNSQEFPQPIKLEGDADVPSILEPHIILLGGKAMIKPDFQCKKCNKTISLTGFFEHWESHINAQPTHPMKVRSGPSIRRGELQQTIIKECIARLSNNPKECNHCHRWFKRVNECKRHIIEHLLADAYNQKHVLHELRCQICEAGFAVQEKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVIICDLCGKKFQSKMSLEKHIEKHQSTAPITCELCNKIFYFESSYRRHIRYFHEKTTHGFRCMNCGARFDSLKQKWDHMWLVHKERKQKADCPICHESFRKFSDVRAHARATHYMEVSVLSVKRASGPNTTVIDKFLGETTKIKVGKKETLIVYDAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00043957;
- 90% Identity
- -
- 80% Identity
- -