Aexc045168.1
Basic Information
- Insect
- Agrotis exclamationis
- Gene Symbol
- -
- Assembly
- GCA_950005045.1
- Location
- OX465445.1:9824329-9837267[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.5 68 5.7 1.4 1 23 216 239 216 239 0.95 2 15 5.7 7.8e+02 2.4 0.1 3 11 278 286 277 290 0.90 3 15 0.0078 1.1 11.4 0.4 1 23 331 354 331 354 0.92 4 15 0.002 0.28 13.2 1.5 2 23 392 414 391 414 0.96 5 15 2.4 3.2e+02 3.6 4.3 1 23 418 440 418 440 0.94 6 15 0.43 59 5.9 1.7 1 20 668 686 668 688 0.91 7 15 0.31 43 6.3 2.6 1 23 701 723 701 723 0.93 8 15 2.3 3.1e+02 3.6 6.0 3 23 730 750 727 750 0.94 9 15 1.4 1.9e+02 4.3 10.2 2 23 834 855 833 855 0.95 10 15 0.0036 0.49 12.4 0.2 2 23 871 892 870 892 0.96 11 15 5.6e-07 7.6e-05 24.4 2.7 1 23 898 920 898 920 0.99 12 15 4.1e-05 0.0056 18.5 0.3 3 23 927 947 925 947 0.96 13 15 0.00023 0.032 16.2 1.3 2 23 954 976 953 976 0.96 14 15 0.3 41 6.4 0.2 1 20 983 1002 983 1006 0.94 15 15 0.001 0.14 14.1 0.6 3 23 1015 1036 1014 1036 0.95
Sequence Information
- Coding Sequence
- ATGGCGGACACATCGAGGAAAAGGTCGAGAAAATCGAAGTTAGTGCCTCGAGAGTGTTCTTTGTACGAAGATGATATTGAATTGCAGCTTCCAGAGTCTAAGGTATTCAGAGCGACTATTCCCCAGCAACCTAGcgttaaacaacaaaaaacagtCAGCAAGCCAATAAAACCACCGGAAAGTACAATTACAAGACCGATAGACACTAAACTACAAGAAGTAGACACAAGTGTCCTGAAGAAAATCAATGCATCTGCTAAAGAAGATGTTGAACCAAAAATGAAGATATCAACTAGAAAATTCGAGATTAACATAGAAGTAGAATcttgtgatgatgatgatgacgaatttGCAAGCATCAGAATTGAAAATAGCTTGGGCACGCCGGGTGAAGATATTCTAAGTGCACCACGTACAAAACCTATACCTCTCTTGAGAGAACGCATACTTGAAGCCGCAGACAACATACTTGACACTTCAACAGAAACTGCTGATAAAATCTTAAGCATATGCGTAAGAAATACTATAGGAGAGGAGCTGGAAGCAGGACTAAAGACAACAGGATATGAGGTCAAAATCCAGCGAGCTTTAGAAGATTGGAGAGACTGGCAATACCGTAGTTTCCACCGAGAAGACCCTTTATTCTACAAATGCTACATTTGTACTAAATCCTGGTGGTATTTGTCAGATTTTCGTAACCATATGTCTTCGCAACACCCTAATgatgaaaaaatcaaaattattatgGAAGTATATGAATCCCATGAAGTAAATTTGATTGCATATCAAAGTAAACTTCTTGTGATCAAAGACATATATACTGAAGGTCTTTGCCACCGCTGCGGCAAAGACTTTGCTGCTCATGAGTTAGGAGGGAGACATCAGGAGAAATTTTACAGCAATAAAGGATGTTATAAACAGTTTTTTAGCTGCATGGGTCTACGAGATCACCTCCCATCTTGTCCTGTTTGTAACGTAGAAAATAAGCCATTCAAATGTGATATTTGCAAGTCAAGATTTGATACTGTATATGAACTGAATGATCACTTGGTTTGGTCTCACTCAGTTCGGTCTGATATTCCTATAATGGGTCACTATGATATTTGCTATAAGTGTTCTGGGAAATATTCTTCTAAATATTTGCACAAATGTTTACAAATGGGACCATATAGTGAATGTCCTAATTGCTTTAGGACTTTCTCAAATACCAAATCGATGGAACTACATTTGAAGCGTTCTCATAATAAGCCATATAAATGTGAAATTTGCAATAAATTTATGAAATATAGCTGTAGTAAGTACGAGCATATGTTGGAACATACAGATAGATTCATGATTGTGAGGAAGTGTGTTAAATGTGATGGCTTAAATGTATTTCTGAATAATGATGATGCTGCAGCGCATATTGAATTGAAACATGAGCCAAAGGATAAGGTGGAACAGATATATTTTCCTAAAattcttGTACCCTCATCTTGCGTATATCAAAGCTTAGCGGAGTCTGAAATGGAGGAAGAGGAGTCGTTAGTTGAAGAAGAATTGATGCTAGAGGGCAAAGAATTGGAGCCAACGTCTGAACTGGAAAAATCTGCGGCAGGATTTATGATGAATAATGTTGTAGTTAAAGAAGAACCGCCGGACACAGAAGAGAGCCCAGCTCTAGTAATCAAAGAAGAACCGCAAGAAGAAATAGAAAACCAAACAGAAGACAACCTTGACCACGAGATAAAAGTAAAAGAGGAAGTTTTAGAAGCAGAAGAAGAAATTGATGAATATGAAGATGATTTAATAAAGCTAAACTTTGATATCGAAGACTTGTTAGTAAAGCAAGAAAATATGGGTGATGAAACAGAATATTCTCAAGATACATCAGAAATGCaaacagatgatgatgattcccaAGACTGCCCTAAACCGATCAAAGAAGAAAGTGCAAATTCAATACTAGAACCTCATATAATAATGTTAGGAGGtaataagaaagtaaaaaagaaaaatgtatatAGATGTACCAAATGTGGTTTCACATCAAACCATAGGCAGTACAGAGCCCATATTGAATTTGACTGTCCCAAAAGTATAATGAAACGTAACAAGCATTTTATTTGCACAAAATGTAATAGTACATTTAAGTCCATGAAGAAATATTTGGCGCATTTTGAACAGCATGGTTACAAACATAAATGTTGCCCAGATTGTTTGCATGAATTTGATAATTATAACGCTTTGGGACATCATGTACAGAcacatataaaacaaaattttgtgcGAATCAAGTTGATTACGCATGCAGGCAAAGCAATGATAAAGCCGGACTTTCAGTGTAAGAAATGCAACAACACAATAGCATTAGATGAATTCTTTGAGCATTGGGAGTCTCATATTAATGCTCAACCCACACATCCGATGAAAGTGAGATCCGGCCCTTCGCTGAAAAGGGGAGAGTTACAACAAACTATCATTAAAGAATGCATTGCTCGCCTCTCAAAAACCCCAAAAGAATGCAACCACTGTCACCGCTGCTTCAAAAGAGTAAACGAATGCAAACGTCACATCATAGAGCATCTACTCGCTGATGCTTACACCCAAAAACATGTCTTCCAAGAATTAAGATGCCAGATCTGTGAAGCCGGCTTTCCTGTTCAAGAGAAATACAAACAACATATGAGAGACCATGCGTCTTTACCAGTGTATAAATGTGAACTGTGCGATAGAACATTCAGTGATTCAAGTAATTttaccaaacataaaaaagtgcaTAATTTAAAAGTGATTATTTGTGATTTGTGCGGCAAGAAGTTTCAGTCGAAGGTGTCTCTGGAGAAGCACATTGACAAACACAAATCCACAGATCCAATTACCTGTGAGCTGTGCAACAAAGTCTTCTACTTCGAGAGCTCCTACAGACGTCACGTCAGATACTTCCACGAGAAAACCACCCATGGTTTCCGTTGCATGAACTGCGGTGCCCGTTTTGAcagcttaaaacaaaaatgggACCATATGTGGTTGGTGCATAAGGAGAGAAAGCAAAAAGCTGACTGCCCTATATGTCATGAGTCTTTTAGGAAGTTTTCTGATGTAAGGGCTCATGCACGAGCAACTCATTATATGGAAGTGTCCGTGCTGAGTGTGAAAAGGGCAAGTGGACCTAACACTACGGTGATTGATAAGTTTCTGGGGGAAACTACTAAGATTAAGGTTGGTAAGAAGGAAACTTTGATTGTTTATGATGCTGACTGA
- Protein Sequence
- MADTSRKRSRKSKLVPRECSLYEDDIELQLPESKVFRATIPQQPSVKQQKTVSKPIKPPESTITRPIDTKLQEVDTSVLKKINASAKEDVEPKMKISTRKFEINIEVESCDDDDDEFASIRIENSLGTPGEDILSAPRTKPIPLLRERILEAADNILDTSTETADKILSICVRNTIGEELEAGLKTTGYEVKIQRALEDWRDWQYRSFHREDPLFYKCYICTKSWWYLSDFRNHMSSQHPNDEKIKIIMEVYESHEVNLIAYQSKLLVIKDIYTEGLCHRCGKDFAAHELGGRHQEKFYSNKGCYKQFFSCMGLRDHLPSCPVCNVENKPFKCDICKSRFDTVYELNDHLVWSHSVRSDIPIMGHYDICYKCSGKYSSKYLHKCLQMGPYSECPNCFRTFSNTKSMELHLKRSHNKPYKCEICNKFMKYSCSKYEHMLEHTDRFMIVRKCVKCDGLNVFLNNDDAAAHIELKHEPKDKVEQIYFPKILVPSSCVYQSLAESEMEEEESLVEEELMLEGKELEPTSELEKSAAGFMMNNVVVKEEPPDTEESPALVIKEEPQEEIENQTEDNLDHEIKVKEEVLEAEEEIDEYEDDLIKLNFDIEDLLVKQENMGDETEYSQDTSEMQTDDDDSQDCPKPIKEESANSILEPHIIMLGGNKKVKKKNVYRCTKCGFTSNHRQYRAHIEFDCPKSIMKRNKHFICTKCNSTFKSMKKYLAHFEQHGYKHKCCPDCLHEFDNYNALGHHVQTHIKQNFVRIKLITHAGKAMIKPDFQCKKCNNTIALDEFFEHWESHINAQPTHPMKVRSGPSLKRGELQQTIIKECIARLSKTPKECNHCHRCFKRVNECKRHIIEHLLADAYTQKHVFQELRCQICEAGFPVQEKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVIICDLCGKKFQSKVSLEKHIDKHKSTDPITCELCNKVFYFESSYRRHVRYFHEKTTHGFRCMNCGARFDSLKQKWDHMWLVHKERKQKADCPICHESFRKFSDVRAHARATHYMEVSVLSVKRASGPNTTVIDKFLGETTKIKVGKKETLIVYDAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00043957;
- 90% Identity
- -
- 80% Identity
- -