Basic Information

Insect: Agrotis clavis
Gene Symbol: -
Assembly: GCA_954870645.1
Location: OX940944.1:10077141-10093548[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.99 1.2e+02 4.8 1.5 1 23 216 239 216 239 0.94

2 16 7.5 9.3e+02 2.1 0.3 3 11 278 286 277 288 0.90

3 16 2.5 3.1e+02 3.6 0.5 5 19 303 317 302 318 0.92

4 16 0.0025 0.31 13.0 0.8 1 23 331 354 331 354 0.95

5 16 0.00043 0.053 15.4 1.0 2 23 392 414 392 414 0.96

6 16 2.5 3.1e+02 3.6 4.3 1 23 418 440 418 440 0.94

7 16 0.36 45 6.2 1.9 1 20 664 682 664 684 0.91

8 16 0.42 52 6.0 2.3 1 23 697 719 697 719 0.92

9 16 0.18 22 7.2 1.7 3 23 726 746 723 746 0.94

10 16 0.16 20 7.3 1.2 1 23 769 790 769 790 0.93

11 16 0.0038 0.47 12.4 0.2 2 23 867 888 866 888 0.96

12 16 6e-07 7.3e-05 24.4 2.7 1 23 894 916 894 916 0.99

13 16 6.8e-05 0.0083 17.9 0.5 3 23 923 943 921 943 0.96

14 16 8.5e-05 0.011 17.6 1.7 2 23 950 972 949 972 0.96

15 16 0.24 29 6.8 0.2 1 20 979 998 979 1002 0.94

16 16 0.0011 0.14 14.1 0.6 3 23 1011 1032 1010 1032 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.99	1.2e+02	4.8	1.5	1	23	216	239	216	239	0.94
2	16	7.5	9.3e+02	2.1	0.3	3	11	278	286	277	288	0.90
3	16	2.5	3.1e+02	3.6	0.5	5	19	303	317	302	318	0.92
4	16	0.0025	0.31	13.0	0.8	1	23	331	354	331	354	0.95
5	16	0.00043	0.053	15.4	1.0	2	23	392	414	392	414	0.96
6	16	2.5	3.1e+02	3.6	4.3	1	23	418	440	418	440	0.94
7	16	0.36	45	6.2	1.9	1	20	664	682	664	684	0.91
8	16	0.42	52	6.0	2.3	1	23	697	719	697	719	0.92
9	16	0.18	22	7.2	1.7	3	23	726	746	723	746	0.94
10	16	0.16	20	7.3	1.2	1	23	769	790	769	790	0.93
11	16	0.0038	0.47	12.4	0.2	2	23	867	888	866	888	0.96
12	16	6e-07	7.3e-05	24.4	2.7	1	23	894	916	894	916	0.99
13	16	6.8e-05	0.0083	17.9	0.5	3	23	923	943	921	943	0.96
14	16	8.5e-05	0.011	17.6	1.7	2	23	950	972	949	972	0.96
15	16	0.24	29	6.8	0.2	1	20	979	998	979	1002	0.94
16	16	0.0011	0.14	14.1	0.6	3	23	1011	1032	1010	1032	0.95

Sequence Information

Coding Sequence: ATGGCGGATACATCGAGGAAAAGGTCGAGAAAATCGAAGTTAGTGCCTCGAGAGTGTTCTTTGTACGAAGATGATCTTGAATTGCAGCTTCCAGATTCTAAGGTATTCAGAGCGACTATTCCCCAGCAACCTAGcgttaaacaacaaaaaacagtcAACAAGCCAGTTACACCTCCAGAAAGTACAATTACAAAACCATTGGAAGATAAACTACAAGAAGTAGACACAAGCGTCTTGAGGAAAATCAATGCAGCGGCCAAAGAAGAAGTTGAACCAAAAATTAAGATATCACCAAGAAAATTCGAGATAAACATAGAAGTAGAATCttgtgatgatgatgacgacgaATTTGCAAGCATTAGAATTGAAAATAGCTTGACCACACCAGGTGAAGATATACTAAGTGCACCACGTACAAAACCTATACCTCTCTGTAGAGAAAGCATACTCGAAGCTGCAGATAACATACTTGAAACTTCTACGGAAGCTGCTGATAAAATCTTAAGCATATACGTAAGAAATACTATAGGAGAGGAGCTGAATGAAAAACTAAAGACAACAGGATATGAGGCCAAAATCCAGCAAGCTCTAGAAGATTGGAGAGAATGGCAATACCGCAGTTTCCACCGCGAAGACCCTTTATTCTACAAATGCTACATTTGTACTAAATCCTGGTGGTTTTTGTCAGATTTTCGCAACCATATGTCTTCACAACACCCTAATGatcaaaaagttaaaattattaTGGAAATATATGAATCCCATGAAGTAAATTTGGCAGCGCATAAAAGTAAACTTCTTGTGATCAAAGACATAGACACTGAAGGTCTTTGCCATCGCTGCGGCAAAGACTTTGCTGGTCATGAGATAGCACGGAGAGATCAGGGGAAATTTTACAACAATAAAGGTTGTGATAAACAGTTTTTTAGCTGCAAGGGTCTAAGAGATCACGTCCCAACTTGTCCCGTTTGTAACGTAGAGAATAAGCCGTTCAAATGTGATATTTGCAAGTCAAGATTTGATACTgtttatgaattgaacaatcaCTTGGTTCGGTCTCACTCAGTTCGATCCGATATTCCTATAATGGGTCACTACGATATTTGCTATAAGTGTTCGGGGAAATATTCTTCCAAATATCTGCATAAATGCTTACAAACAGGACCACATGAGGAATGCCCTAACTGCTTTAGGACCTTCTCAAATCCTAAATCTATGGAGCTACATTTGAAGCGTACACATAATAAGccatacaaatgtgaaatatgcaaTAAATTTATGAAATATAGCTGTAGTAAGTACGAGCATATGTTGGAACATACTGATAGATACATGATTGTAAGGAAATGTGTTAAATGTGATGGTTTGAATGTATTTCTGAACAATGATGATGCTGCAGCACACACTGAGTTGAAACATGAGCCAAAGGATACCGTGGAACAGAGATATTTTCCTAAAaTTCTTGTACCCTCATCTTGTGTATATCATAGCTTAGCTGAGTCTGAGATGGAGGAAGAGGAATCGTTAGTTGAAGAATTGATGCTGGAGGGCAAAGAGTTGGAGCCAACGTCTGAACAGCACAGATCTGTGGCAGAAATTTTGATGAATAATGTTGTAGTTAAagAAGAACCGCCGGACACAGAAGACAGCCCAGCTCTAGTAATCAAAGAAGAACCAGCAGAAGAAGAAGAGAATCAAACAGAAGATAACTTTGACCacgaaataaaagttaaagaagAAGTTTTGGAAGCCGAAGAAGATATAGATGAATACGAAGACGATTTGATAAAACTTAACTTTGATATCGAAGACTTGTTGGTGAAGCAAGAAAATATGGGTGATGAAACAGAATATTCACAAGACACATCAGAAATGCCAACAGATGATGATTCCCAAGAATTCCCTCAACCAATCAAAGAAGAAAGTGTAAATTCAATACTAGAacctcaaataataataaaaggggggaaaaaaaagaagaaatcttTATATAAATGTACTAAGTGTGGTTTCACGTCAAATCATAGGCAGTATAGAGCGCATATCGAATTTGATTGCCCCAAAAGTATTATGAAACGTAACAAGCATTATTTGTGCACAAAATGTAATAATACATTCAAGTCTATGAAGAAGTATTTGGCGCATTTTGAGTTGCACGGTTACAAGCATAAATGTTGCCCGGATTGCTTGtatgaatttgaaaattataatgCTTTGGGGCAGCATGTGCAGATGCATATCAAACAGAATTTTGTGCGAATAAAGATGATTACACATGCAGgcaaAGCCATGATAAAACCGGACTTCCAGTGTAAGAAATGTAACAAGACGATATCGTTAGATGAATTCTTTGAACATTGGGAGTCTCATATCAACGCGCAGCCCACACATCCGATGAAGGTCAGGTCTGGGCCTTCGCTGCGAAGAGGAGAATTACAACAAACCATCATAAAAGAATGCATTGCTCGCCTCTCCAAAAACCCAAAGGAATGCAACCATTGTCATCGTTGGTTCAAACGAGTAAACGAATGCAAACGTCACATCATAGAACATCTACTGGCAGACGCTTATACTCAGAAACACATACTCCAAGAATTGAGATGCCAGATCTGCGAAGCCGGATTTCCGGTCcaagaaaaatataaacaacacATGCGAGATCATGCGTCTTTGCCTGTGTATAAATGTGAATTGTGTGATAGAACATTCAGTGATTCAAGTAATTTtaccaaacataaaaaagtgcATAATTTAAAAGTGATTATTTGTGATCTGTGCGGCAAGAAGTTTCAGTCGAAGATGTCTTTGGAGAAACATATTGACAAACACAAATCCACTGCTCCAGTCACATGCGAGCTATGCAACAAGACATTTTACTTCGAGAGCTCATATAGACGCCACATCAGATATTTCCACGAGAAAACCACACATGGTTACCGTTGCATGAATTGCGGAGCCCGTTTTGATagcttaaaacaaaaatgggaTCATATGTGGTTGGTACATCATGAGAGGAAGCAGAAAGCCGACTGCCCCATATGCCATGAATCCTTCAGAAAGTTTTCTGATGTCAGAGCTCATGCACGAGCAACTCATTACATGGAAGTGTCCGTGTTGAGTGTGAAGAGGGCAAGCGGACCCAATACCACGGTCATTGATAAGTTTTTGGGGGAGACTGCGAAGATTAAGGTTGGTAAGAAGGAGACTTTGATTGTTTATGATGCTGATTGA
Protein Sequence: MADTSRKRSRKSKLVPRECSLYEDDLELQLPDSKVFRATIPQQPSVKQQKTVNKPVTPPESTITKPLEDKLQEVDTSVLRKINAAAKEEVEPKIKISPRKFEINIEVESCDDDDDEFASIRIENSLTTPGEDILSAPRTKPIPLCRESILEAADNILETSTEAADKILSIYVRNTIGEELNEKLKTTGYEAKIQQALEDWREWQYRSFHREDPLFYKCYICTKSWWFLSDFRNHMSSQHPNDQKVKIIMEIYESHEVNLAAHKSKLLVIKDIDTEGLCHRCGKDFAGHEIARRDQGKFYNNKGCDKQFFSCKGLRDHVPTCPVCNVENKPFKCDICKSRFDTVYELNNHLVRSHSVRSDIPIMGHYDICYKCSGKYSSKYLHKCLQTGPHEECPNCFRTFSNPKSMELHLKRTHNKPYKCEICNKFMKYSCSKYEHMLEHTDRYMIVRKCVKCDGLNVFLNNDDAAAHTELKHEPKDTVEQRYFPKILVPSSCVYHSLAESEMEEEESLVEELMLEGKELEPTSEQHRSVAEILMNNVVVKEEPPDTEDSPALVIKEEPAEEEENQTEDNFDHEIKVKEEVLEAEEDIDEYEDDLIKLNFDIEDLLVKQENMGDETEYSQDTSEMPTDDDSQEFPQPIKEESVNSILEPQIIIKGGKKKKKSLYKCTKCGFTSNHRQYRAHIEFDCPKSIMKRNKHYLCTKCNNTFKSMKKYLAHFELHGYKHKCCPDCLYEFENYNALGQHVQMHIKQNFVRIKMITHAGKAMIKPDFQCKKCNKTISLDEFFEHWESHINAQPTHPMKVRSGPSLRRGELQQTIIKECIARLSKNPKECNHCHRWFKRVNECKRHIIEHLLADAYTQKHILQELRCQICEAGFPVQEKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVIICDLCGKKFQSKMSLEKHIDKHKSTAPVTCELCNKTFYFESSYRRHIRYFHEKTTHGYRCMNCGARFDSLKQKWDHMWLVHHERKQKADCPICHESFRKFSDVRAHARATHYMEVSVLSVKRASGPNTTVIDKFLGETAKIKVGKKETLIVYDAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00043957;
90% Identity: iTF_00043957;
80% Identity: -