Astr013068.1
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- -
- Assembly
- GCA_950108535.1
- Location
- OX467310.1:12012535-12015304[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00017 3.1 9.0 0.2 18 43 134 159 130 166 0.92 2 5 0.0012 22 6.2 0.1 20 46 193 219 182 225 0.84 3 5 4.2e-07 0.0075 17.3 0.1 20 46 249 275 241 281 0.88 4 5 0.026 4.8e+02 2.0 0.0 21 46 278 303 275 310 0.82 5 5 0.54 9.9e+03 -2.2 0.0 4 12 329 337 324 341 0.79
Sequence Information
- Coding Sequence
- ATGAGTTGCAATTTTAACGGAAATACTCCAGAATTTGTGCACGTGAAACCAGAAATCGTCGAATACGATattaatagTGTCAAACAGGAAGTAAAAGTCGAAAAAGAAGCTGAAGACAATAATGATATTACTGAAAATGAATGCCCCAATGTCATTACTGAACAAATGCCAGCTTCCAGCGCTGCATACTTTGCGGAATGTGTGATAAAAGAAGAACCAATTGATTGCGACGGTAATGTAACTGATCCACGTTATGATGAAATTGTTGAAGAGACTGAAGAGTGGATAGACCAATcagACTCAAAGCAAGCGTCccacacaaacaaacaacaaaaagaATACAAATGCAACTATTGTGGTAAGATCTGCAAAACCTCATCGCTACTCGGTCAACATAAACGTTCGCACATGATAAATCCATACACTTGTGACCTCTGCGGCAAACTGTTTTCGTTAAAACAAAACCTCCGCAGACACAGAGGCAGTAGTCGCTGCAAAATTCCCAAAGTAAATTGTTCTTTATGCCAAAAGTCGTTCAAAACGGAATACTTACTGAAAAGTCACCTCCGTAGTCACACAACTGAAATACCTTATACATGTGACTTGTGCCAAAAGAAGTTTAAACATAAAACCACTTTGGCTCGCCATATGCAAATTCATAGTGGAATAACACCGTATAAATGCAAATTTTGTGATAAAGGTTTCACGCACAGAGCTTTGTTAAAACCACATATGATAAAACATACTGGTGAGAAACCACACCAATGTCCAAAATGTTATAAGAGGTTCGGACAAAAACATAACATGACGAGACATTTAGAGAAccataaaaaagaaaagaaattaaCTTGCGATATTTGCAATAAACTGTTTCCTAAAGAGAGCCGGTTAAAATATCACATGAAAATTCatgttaaagaaaaatatttctcCTGTTTAATTTGTCCTAAGAAATTTTCTCATAGAGGTAATGTAATAAAGCATTATCAAGCAAAACATCCTAACGATACATATGTTTGTAAAGATACAGACGCTAGCGTAGCTTTGAAAATATGGCAAGAAGTGGTTGTTGATAAAAGTAGAAAACTAGATAAAATACCGGAAGAAGATATTTGTATTCCTGTTGGAAATATGGAAATTCTTACAATGATGACTAGTAAATCTGAAAAAGTTATAGGACAAGCTGTTGAGAGAATTGAAGAGGAGTCACAGTATATATTACCAGATTTTATACCGGATCCGACTAAATTTGAAATAGTTAAAGAAGAAAAGGTAACGTCAGATGTAGAATTATAA
- Protein Sequence
- MSCNFNGNTPEFVHVKPEIVEYDINSVKQEVKVEKEAEDNNDITENECPNVITEQMPASSAAYFAECVIKEEPIDCDGNVTDPRYDEIVEETEEWIDQSDSKQASHTNKQQKEYKCNYCGKICKTSSLLGQHKRSHMINPYTCDLCGKLFSLKQNLRRHRGSSRCKIPKVNCSLCQKSFKTEYLLKSHLRSHTTEIPYTCDLCQKKFKHKTTLARHMQIHSGITPYKCKFCDKGFTHRALLKPHMIKHTGEKPHQCPKCYKRFGQKHNMTRHLENHKKEKKLTCDICNKLFPKESRLKYHMKIHVKEKYFSCLICPKKFSHRGNVIKHYQAKHPNDTYVCKDTDASVALKIWQEVVVDKSRKLDKIPEEDICIPVGNMEILTMMTSKSEKVIGQAVERIEEESQYILPDFIPDPTKFEIVKEEKVTSDVEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00035975; iTF_00035051; iTF_00035304; iTF_00284814; iTF_00285065; iTF_00035068; iTF_00035305;
- 90% Identity
- iTF_00035975;
- 80% Identity
- iTF_00035975;