Basic Information

Insect: Agriphila geniculea
Gene Symbol: -
Assembly: GCA_943789515.1
Location: CALSUL010000597.1:395685-398735[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00048 16 7.5 0.1 20 43 136 159 130 166 0.87

2 5 0.00025 8.1 8.4 0.1 19 46 191 219 184 225 0.87

3 5 4.9e-07 0.016 17.1 0.1 20 46 249 275 241 281 0.88

4 5 0.026 8.5e+02 2.0 0.0 21 46 278 303 275 310 0.82

5 5 0.58 1.9e+04 -2.3 0.0 4 12 329 337 324 340 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00048	16	7.5	0.1	20	43	136	159	130	166	0.87
2	5	0.00025	8.1	8.4	0.1	19	46	191	219	184	225	0.87
3	5	4.9e-07	0.016	17.1	0.1	20	46	249	275	241	281	0.88
4	5	0.026	8.5e+02	2.0	0.0	21	46	278	303	275	310	0.82
5	5	0.58	1.9e+04	-2.3	0.0	4	12	329	337	324	340	0.79

Sequence Information

Coding Sequence: ATGAGTGGTAGCAATTTTATGGGAGATACTCCAGAATTTGTGCATGTGAAACCAGAAATCCACGATTACGATATTACTAGTGTCAAGcaggaaataaaaattaaaaaggagGTTGGAGACGCTAATGAAATTGCTGAAAATGAATGCCCCAATGTCGTTACTGACCAAACACCAGATTCCAGCGCTGCATACTTTGCGGAATGTGTGATAAAAGAAGAACCGACTGATTCTTGCGATGGCAATGATCCACATTATGATGGAATTGTTGAAGAGACCGAAGAGTGGATAGACCAATCAGATACAAAGCAAGCGacccacacaaacaaacaaaaaaaagaatacaaATGCAACCATTGTGGTAAGATCTGCAAAACTTCATCGCTACTCGGTCAACATAAACAATCACACATGCTAAATCCATACACTTGTGACCTCTGCGGCAAActattttctttaaaacaaaaccTTCGCAGACACAGAGGCAGTAGTCGCTGCAAAATCCCCGAAGTAAATTGTTCTTTATGCCAAAAGTCATTCAAAACAGAATATTTACTAAAAAGCCATCTCCGTAGTCACCAAACTGAAATACCTTATACATGTGACTTGTGTCAAAAGAAGTTTAAACATAAAACCACTTTGGCTCGCCATATGCAAATTCATAGTGGGATAACACCGTTCAAATGCAAATTCTGCGGTAAAGGTTTCACACACAGAACTTTGTTAAAACCTCATATGATAAAACATACTGGTGAAAAACCACATCAGTGTCCAAAGTGTTATAAAAGGTTCGGACAAAAACATAACATGATGAGACACTTAGAAAACcataagaaagaaaagaaattaaCTTGTGATATTTGCAATAAACTGTTTCCTAAAGAGAGCCGGTTGAAATATCACATGAAAATTCatgtaaaagaaaaatatttctcATGTTTAATTTGTCCTAAGAAATTTTCTCATAGAGGTAATGTAATAAAGCATTACCAAGCCAAACATCCTAACGATACATATGTTTGCAAAGATACTGATGCTAGCATAGCTTTGAAAATATGGCAAGAAGTGGTTGTTGATAAAAGTCGGAAACTAGATAAAATACCGgaagaaaatatttgtattccTGTTGGAAACACGGAAATTCTTAAAACGATGCCTTGTAAATCTCTAAAAGTTATAGAAAAAGCTGTTGAGGGAATCGAAGAGGAGTCCCAGTATATATTACCAGATTTTATACCGGATTCAACTAAATATGAAATAGTTAAAGAAGAAAAGGTAACGTCTGATGTAGAATTATAA
Protein Sequence: MSGSNFMGDTPEFVHVKPEIHDYDITSVKQEIKIKKEVGDANEIAENECPNVVTDQTPDSSAAYFAECVIKEEPTDSCDGNDPHYDGIVEETEEWIDQSDTKQATHTNKQKKEYKCNHCGKICKTSSLLGQHKQSHMLNPYTCDLCGKLFSLKQNLRRHRGSSRCKIPEVNCSLCQKSFKTEYLLKSHLRSHQTEIPYTCDLCQKKFKHKTTLARHMQIHSGITPFKCKFCGKGFTHRTLLKPHMIKHTGEKPHQCPKCYKRFGQKHNMMRHLENHKKEKKLTCDICNKLFPKESRLKYHMKIHVKEKYFSCLICPKKFSHRGNVIKHYQAKHPNDTYVCKDTDASIALKIWQEVVVDKSRKLDKIPEENICIPVGNTEILKTMPCKSLKVIEKAVEGIEEESQYILPDFIPDSTKYEIVKEEKVTSDVEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00036284;
90% Identity: iTF_00035051;
80% Identity: iTF_00035051;